Bordetella bronchiseptica RB50: BB3403
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Entry
BB3403 CDS
T00141
Name
(GenBank) putative ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
bbr
Bordetella bronchiseptica RB50
Brite
KEGG Orthology (KO) [BR:
bbr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbr03019
]
BB3403
Enzymes [BR:
bbr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BB3403
Messenger RNA biogenesis [BR:
bbr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BB3403
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
T2SSE
NACHT
nSTAND3
AAA_25
SLFN-g3_helicase
ResIII
AAA_30
TsaE
PhoH
SRP54
Motif
Other DBs
NCBI-ProteinID:
CAE33895
UniProt:
A0A0H3LPI3
LinkDB
All DBs
Position
complement(3644022..3647906)
Genome browser
AA seq
1294 aa
AA seq
DB search
MPEASRPPERAAAARSEPRPERPIPAISYPEDLPVSARRQEIARAIAAHQVVIVSGETGS
GKTTQLPKICLELGRGRRKMIGHTQPRRLAATSVAKRIAEELRTPMGEVVGYQVRFNDRT
GPNASIKLMTDGILLAESQRDPLLRRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLK
VIITSATIDAERFARHFAAGPERPAPVIEVSGRLYPVEVRYRPVQPPMSDEAAAAPAKGG
RERSAGDEERDLIDAIVDAVDECARHGPGDVLVFLPGEREIRESAEALRKRHPVGTEVLP
LYARLSQAEQEQIFHPRGNARRVVLATNVAETSLTVPGIRFVVDSGLARVKRYSWRNKVE
QLRIEPVSRASANQRAGRCGRIGPGLCIRLYDETDFNARAPFTDPEVLRSSLASVILRMK
SLKLDDIEQFPFVEAPPGRAVADGYHLLQELGAIELAGDGEAAEAGGGGAAFRLTRTGQE
LAKLPVDPRIGRMILAAREQQCLAEMLIIAAALSVQDPRDRPMAEREAAESAHAKFADDK
SEFLSFLKLWRWYGEQVQHKASQRKLVALLRQNFLSPVRLREWHDVHTQLAALVGEQGWR
LNQSEATYEQLHMALLSGLLGNIGFKGEEGGQYHGAREIRFHIHPGSRLVKKAGRWIVAA
ELVETTRLYARCVARIEPVWLERAAAHLLRRNWSDPRWEKKAGQVVANERATLYGLLVYN
GRRVHYGRINPQHARELFIRQALVPGEIDTRLPFVAHNRKLIAGIEKLEHQTRRPDILVD
DELIYAFYDRQLPADISQTASLEKWVNGLDKAAAARLLLTRDELMRHEAAGVTTDVFPKK
VEWQGVAMPLDYHFEPGSPRDGVTLSVPLFALNQLDAQRCEWLVPGMLKEKAHLLLKSLP
QKLRRHCVPLPDYAAGFYERWYERQADPQQGLVDALIADMWDQVQVRPAPGDFKLETLPA
HLFMNFKVVDEHGRMLAAGRNLAQLKAELGKQAQATFQQLAARDSDVAQALAHENLTSWS
FGPLPEIMEIKRGGQSVIGYPALVDRGAHCDLDVFDDPDEARRHHRAGLLRLFRLALREQ
VKFLEKNLADLTKMSMLYMALGTQEELRDQIIDCALAQACLAEPWPVNEQQFEARRQEGK
GRLGLLAQEVARMAHAILAEYGALQRKLPQARPHAAAYADLQQQLGVLMPKWFVRDTPYA
QLAHYPRYLKAAVARIDKLRADPARDARLMGEMAPILTQYQRARSALKGAPDPRLDEFRW
LLEELRVALFAQELRTPMPVSVKRLMKAWESLRR
NT seq
3885 nt
NT seq
+upstream
nt +downstream
nt
atgccagaagcctcccgtccgcccgagcgcgcggccgccgcgcgctccgagccgcgcccc
gagcggcccatccccgcgatttcctatcccgaagacctgccggtcagcgcgcggcgccag
gaaatcgcgcgcgccatcgccgcccaccaggtggtcatcgtcagcggcgagacggggtcg
ggcaagacgacccagctgcccaagatctgcctggagctggggcgcggccggcgcaagatg
atcggccatacccagccccgccgcctggcggccacctcggtggccaagcgcatcgccgaa
gagctgcgcacgccgatgggcgaagtggtggggtaccaggtgcgcttcaacgaccgcacc
ggcccgaacgcctcgatcaagctgatgaccgacggcattctgctggccgagtcgcagcgc
gatccgctgctgcgccgctacgacaccatcatcatcgacgaggcgcacgagcgcagcctg
aacatcgacttcctgctcggctacctcaagcagctgctgccgcgccggcccgacctgaaa
gtcatcatcacctcggccaccatcgacgccgagcgtttcgcgcggcatttcgccgccggc
cccgagcgtccggcgcccgtcatcgaggtgtcggggcgcctgtatccggtggaagtgcgc
taccgcccggtgcagccgcccatgtccgacgaagcggccgccgcgcccgccaagggcggg
cgtgaacgcagcgccggcgacgaagagcgcgacctgatcgacgccatcgtcgacgcggtc
gacgagtgcgcgcgccacggtcccggcgacgtgctggtgttcctgccgggcgagcgcgaa
atccgcgagtcggccgaggcgctgcgcaaacgccatccggtcggcaccgaagtgctgccg
ctgtatgcgcggctgtcgcaggccgagcaggaacagatcttccacccgcgcggcaatgcg
cggcgggtggtgctggccaccaacgtggccgaaacctcgctgaccgtgccgggcatccgc
ttcgtggtcgacagcgggctggcgcgcgtcaagcgctactcctggcgcaacaaggtcgaa
cagttgcgcatcgagccggtcagccgcgcctcggccaaccagcgcgccggccgttgcggc
cggatcggcccgggcctgtgcatccgcctctacgacgagaccgatttcaacgcccgcgcg
ccgttcactgacccggaggtgctgcgctcctcgctggcgtcggtgatcctgcgcatgaag
tcgctcaagctggacgacatcgagcagtttccgttcgtcgaggcgccgccggggcgcgcc
gtggccgatggctaccacctgctgcaggagctgggcgccatcgagctggccggcgacggc
gaagccgccgaggcgggcggtggcggcgcggcgtttcgcctgacccgcaccggccaggag
ctggccaagctgccggtggacccgcgcatcggccgcatgatcctggccgcgcgcgaacag
cagtgcctggccgagatgctcatcatcgccgccgcattgtcggtgcaggatccgcgcgac
cgcccgatggccgagcgcgaggcggccgaaagcgcgcacgccaagttcgccgacgacaag
tccgaattcctgtcgttcctgaagctgtggcgctggtatggcgagcaggtgcagcacaag
gcatcgcaacgcaagctggtggcgctgctgcgccagaacttcctgtcgccggtgcgcctg
cgcgaatggcacgacgtgcatacccagttggccgcgctggtgggcgagcagggctggcgc
ctgaaccagagcgaggccacctacgagcagctgcacatggcgctgctgtcgggcttgctg
ggcaatatcggtttcaagggcgaagagggcggccagtaccacggcgcgcgcgagatccgt
ttccacatccatcccggctcgcgcctggtcaagaaggccgggcgctggatcgtcgccgcc
gaactggtggaaaccacgcgcctttacgcgcgctgcgtggcgcgcatcgagccggtatgg
ctggagcgcgccgccgcgcacctgctgcgccgcaactggtccgacccgcgctgggagaaa
aaagccgggcaggtggtcgccaacgagcgcgccaccctgtatggcctgctggtgtacaac
ggccggcgggtgcactacggccgcatcaacccgcagcacgcccgcgaactgttcatccgc
caggccctggtgcccggcgagatcgacacccggctgccgttcgtggcgcacaaccgcaag
ctgatcgccggcatcgagaagctggagcaccaaacgcgccggcccgacatcctggtcgac
gacgagctgatctacgcgttctacgaccgccagttgccggccgacatttcgcagaccgcc
agcctggaaaagtgggtaaacgggctggacaaggccgccgccgcgcgcctgctgctgacg
cgcgacgaactgatgcgccacgaggcggccggcgtgaccaccgacgtgtttcccaagaaa
gtcgagtggcagggcgtggcgatgccgctggactatcacttcgagccgggctcgccgcgc
gacggcgtcacgctgtcggtgcccctgttcgcgctcaaccagctcgacgcgcagcgctgc
gaatggctggtgccgggcatgctcaaggaaaaagcccacctgctgctcaagtcgctgccg
cagaagctgcgccgccattgcgtgccgctgcccgactacgcggcgggcttctacgaacgc
tggtacgagcgccaggccgacccccagcagggcctggtcgatgcgctgatcgccgacatg
tgggaccaggtacaggtgcgcccggcgcccggcgacttcaagctggaaacgctgccggcg
cacctgttcatgaacttcaaggtggtcgacgagcatggccggatgctggccgccgggcgc
aatctggcgcagctcaaggccgaattgggcaagcaggcccaggcgaccttccagcaactg
gcggcgcgcgattcggacgtggcgcaagcgctggcgcacgaaaacctgacgtcctggtcg
ttcggccccttgcccgagatcatggagatcaagcgcggcgggcagtccgtcatcggctac
ccggcgctggtcgatcggggcgcgcattgcgatctcgacgtgttcgacgatcccgacgag
gcgcgccgccaccatcgcgccggcctgctgcggctgttccggctggccttgcgcgagcag
gtcaagttcctggaaaagaacctggccgacctgacgaagatgagcatgctgtacatggcc
ctgggcacgcaggaagagctgcgcgaccagatcatcgattgcgcgctggcgcaggcctgc
ctggccgagccctggccggtcaatgagcagcagttcgaggcgcgccgccaggagggcaag
ggcaggctgggtttgctggcgcaggaggtggcgcgcatggcgcacgccatcctggccgaa
tacggcgccctgcagcgcaagctgccgcaggccaggccgcacgcggcggcctacgccgac
ctgcagcagcaactgggcgtgctgatgccgaaatggttcgtgcgcgacacgccttacgcg
cagctggcgcactatccgcgctatctcaaggcggcggtggcgcgcatcgacaagctgcgc
gccgatccggcgcgcgacgcccgcctgatgggcgagatggcgcccatcctcacccagtac
cagcgcgcgcgcagcgcgctcaagggcgcgcccgatccgcgcctggacgaattccgctgg
ttgctggaagaactgcgggtcgccctgttcgcccaggaattgcgcacccccatgccggtc
tcggtcaagcgcctgatgaaggcctgggagtcgttgcggcggtag
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