Bordetella bronchiseptica RB50: BB3769
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Entry
BB3769 CDS
T00141
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bbr
Bordetella bronchiseptica RB50
Pathway
bbr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BB3769 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbr03019
]
BB3769 (rne)
03009 Ribosome biogenesis [BR:
bbr03009
]
BB3769 (rne)
Enzymes [BR:
bbr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BB3769 (rne)
Messenger RNA biogenesis [BR:
bbr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BB3769 (rne)
Ribosome biogenesis [BR:
bbr03009
]
Prokaryotic type
rRNA processing factors
BB3769 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
CAE35743
UniProt:
A0A0H3LUC4
LinkDB
All DBs
Position
3990036..3993176
Genome browser
AA seq
1046 aa
AA seq
DB search
MKRMLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNY
GEDRHGFLPFKEVARSFFKEGVDVRTARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRVEGEDRQELRDTMEQLDVPQGMSIIARTAGIGRNVDELQ
WDLSYLLQLWTAIDGAARDNAAPILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQAT
AFMSVVMPDNVQRVKRYRDDIPLFSRFQIEHQIETAYSRTVQLPSGGAVVIDHTEALVAV
DVNSARSTRGADIEETALRTNLEAAEEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQR
LRDALHFDRARVQMGKISRFGLMELSRQRLRPALNEGSHITCPRCNGTGVIRDAESSALH
VLRLLQEEAMKENTAAVHAQVPVDVATFLLNEKRADITKMEARLKVNLVLIPNKHLETPH
HHIERLRHDDPRLEETKTSFELAEAPATDLTWQPREHEIKARPEALVKGITPAQPAPVST
PAPAKAPAAAAATQGGLGGWFKRLTSWLGGSAEPAKTETKSEDEKRGANRARRAHDGQDR
RGERHGSDRNRHRRNEPRGDHAESGDARHHVRGGRRQEERGERGERGQKEARTEREQTQQ
QQAAGQPRQERPSTAETGEEGGRGRGRRGRGRGRREEGQTDTPMTEQENMVAALAETVAA
ALPEKRQAAPAPAAAAAAALTVAEAASSNELAPVAEDADGIDGIDANVDAGAETGSDPER
KRRRRRSRRGRRSQEDGSTVNAEGVEGADDEQVDAPAGVADIETPAQPAESETVAAPVAV
SVAADEPAATIETAAAEPAAPQATEAPRAEPVVAAADTAPQAVQPVQAELTPVETPQAQA
QPAEPAAAAPVETAPVETAPVETAPVETAPVETAPAATTPVEPAEQAAAPVEAEAPVAQP
EKTPEPAAVRPAEAIVMPAQAAAPATGALHDVLDAAGLTWVETDPERHAQTQMRIAAAAA
PVRLGRERKPVASVSNEPLVQVETRH
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcatgctgtttaatgcgacgcaccaggaagaactgcgcgttgcaatcgtcgac
ggtcagaaactgatcgatctcgacatcgagactgccggtcgcgaacaacgcaaaggcaac
atctacaaaggcgtcatcacccgcatcgaacccggcctggaagcctgcttcgtcaactac
ggcgaagaccgccacggcttcctgccgttcaaggaagtcgcgcgcagtttcttcaaggaa
ggcgtggacgtgcgcaccgcacgcatccaggacgccctgcgcgaaggccaggagctgatc
gtccaggtcgagaaggaagagcgcggcaacaagggcgccgccctgaccacgttcatctcg
ctggccggccgctacctcgtcctgatgccgaacaacccgcgcggcggcggcgtatcgcgc
cgcgtcgaaggcgaggaccgccaggaactgcgcgacaccatggagcagctcgatgtcccc
cagggcatgagcatcatcgcgcgcaccgccggcatcgggcgcaacgtcgacgaactccag
tgggacctgtcctatctgctgcaactctggaccgccatcgacggcgcggcgcgcgacaat
gccgccccgatcctgatctacctcgagtccagcctcgtcatccgcgcgatccgcgactat
ttttcgcccgagatcggcgaaatcctgatcgacaccgacgaaatcgccgaccaggccacc
gccttcatgagcgtggtcatgccggacaacgtccagcgcgtcaaacgctaccgcgacgac
atcccgctgttctcgcgcttccagatcgaacaccagatcgaaaccgcgtactcgcgcacc
gtgcagttgccctcgggcggcgcggtggtcatcgaccacactgaagccctggttgccgtg
gacgtgaactcggcccgctccacgcgcggcgcggacatcgaggaaaccgcgctgcgcacg
aacctggaagccgccgaggaagtggcccgccagttgcgcctgcgcgacctcggcggcctg
atcgtgatcgacttcatcgacatggaggacagcaagaaccagcgcgccgtcgaacagcgc
ctgcgcgatgccctgcatttcgaccgcgcccgcgtccagatgggcaagatctcgcgcttc
ggcctgatggagctgtcgcgccagcggctgcgtccggcgctcaacgaaggctcgcacatc
acttgcccgcgctgcaacggcaccggcgtgatccgcgacgccgagtccagcgccctgcac
gtgctgcgcctgctgcaggaagaagccatgaaggaaaacaccgcggcggtgcacgcccag
gtgccggtcgacgtggccaccttcctgctgaacgaaaagcgcgccgacatcaccaagatg
gaagcccgcctgaaggtcaacctggtgctgattcccaacaagcacctggagacgccgcac
caccatatcgaacgcctgcgccacgacgatccgcgcctggaagaaaccaagaccagcttc
gagctggccgaggccccggccaccgacctcacctggcagccgcgcgagcacgagatcaag
gcgcgccccgaagcgctggtcaagggcatcacgcccgcgcagccagccccggtgtccacg
cccgcccccgccaaggcgcctgccgccgcggcggccacccagggcggactgggcggctgg
ttcaagcgcctgacctcctggctgggcggcagcgccgaaccggccaagaccgaaaccaag
tccgaagacgaaaagcgcggcgcgaaccgtgcgcggcgcgcccacgacggccaggaccgc
cgcggcgaacgccacggctcggaccgcaaccgccatcgccgcaatgagccccgcggcgac
cacgccgagagcggcgacgcgcgtcatcacgtgcgcggcggacgacgccaggaagagcgc
ggtgaacgcggcgagcgtggccagaaggaagcccggaccgaacgcgagcagacccagcaa
cagcaggcagccggccagccgcgccaggaacgcccctcgaccgccgagaccggcgaagaa
ggcggccgtggccgtggtcgtcgcggccgcggacgtggccgtcgcgaggaaggccagacc
gacacgcccatgaccgagcaggaaaacatggtggcggcactggccgaaaccgtggctgcc
gccctgcccgaaaagcgccaggcggcgcccgcgccggcggccgccgctgccgcggccctg
acggtggccgaagccgccagcagcaatgagctggctcccgtggccgaggatgccgacggc
atcgacggtatcgacgccaatgtcgacgccggcgccgaaacgggtagcgatcccgagcgc
aagcgtcgccgtcgtcgcagccgccgtggccgccgcagccaggaagacggcagcacggtc
aatgccgaaggcgtcgaaggcgccgacgacgagcaggtcgacgcgccggcgggcgtagcg
gacatcgagacgcctgcccagccggccgagtccgagaccgtggccgcccccgtggcagtc
agcgtggccgccgacgagcccgccgccacgatcgagaccgccgccgccgagcctgccgcg
ccgcaagctaccgaggcgccccgggccgaacccgtggttgcagccgccgacaccgccccg
caagcggtccagcccgtgcaagcggaactgacgccggtcgaaacgccgcaggcgcaagcc
cagccggctgagccggcagcggccgccccggtggaaacggctccggtcgaaacggctccg
gtcgaaacggctccggtcgaaacggccccggtcgaaacggctccggcggcaaccaccccg
gtcgagcctgccgagcaggccgcggccccggtcgaagccgaagcgcccgtcgctcagccc
gaaaagacgcccgagcccgccgccgtccgtcccgccgaagccatcgtgatgcccgcgcaa
gcggccgcaccggcaaccggcgcgctgcacgacgtcctcgacgccgccggcctgacctgg
gtcgaaaccgatccggaacgtcacgcgcaaacccagatgcgcatcgccgcggccgccgcg
ccggtgcgcctgggccgcgagcgcaagccggtggcttcggtttccaacgaaccgttggtg
caagtcgaaacgcgtcactga
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