Bordetella bronchiseptica RB50: BB3818
Help
Entry
BB3818 CDS
T00141
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bbr
Bordetella bronchiseptica RB50
Pathway
bbr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bbr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BB3818 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbr03400
]
BB3818 (mfd)
Enzymes [BR:
bbr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BB3818 (mfd)
DNA repair and recombination proteins [BR:
bbr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BB3818 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
MFD_D3
ResIII
Glyco_tran_WecG
SNF2-rel_dom
Cas3-like_C_2
UB2H
AAA_30
ELP6
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
CAE35792
UniProt:
A0A0H3M1D8
LinkDB
All DBs
Position
4042642..4046097
Genome browser
AA seq
1151 aa
AA seq
DB search
MPDLTPPAVPIPATATTLSALKPGARFTQPRPPGSGDGWLLADLARQAGKPLVVLTADPL
EAQRLADEIPQFAPELRVRQLPDWETLPYDAFSPHQDLISQRLRTLHALMNQGVDILTVP
VTTALYRLAPPAFLAAYTFSFKQKDRLDEAALRAQLTLANYSHVTQVTAPGEFCLRGGLI
DLFPMGSVVPYRLDLFDDEIESIRSFDVDTQRSLYPVGEVQLLPGREFPMDEEARNRFRA
RFREVFEGDPSRALPYKDIGNGIAFAGIEYYLPLFFEQTATLFDYLAADTITVTVGDIDD
AMQRFAHDTRSRYDFLKVDRERPVLPPDTLFLDHEALFARLKDFPRLALMAERPHPDFAA
APDVAVARRADDPVARLRALLAQTGDRVLLCADSAGRRETLAQMLGEHGLAPEAQADSIQ
AFLDDGARFGLAVAPLSAGFCVPGGALLFLTENDLYPGHAGVTRRGKRTQERTSNVEAMV
RDLAELRAGDPVVHAQHGIGRYHGLVNMDMGEGEMEFLHLEYASGSTLYVPVSQLHVIAR
YSGADPDAAPLHQLGSGQWDKARRKAARQVRDTAAELLALYAQRAAREGYAFKLPMSDYE
AFAEGFGFEETPDQAAAIQAVIMDMTSGRPMDRLVCGDVGFGKTEVALRAAFLAVANGKQ
VALLCPTTLLAEQHAQTFSDRFADWPVRVVELSRFRSAKEVAAAVEGINDGRVDIVIGTH
KILSKDVRFKRLGLVIIDEEHRFGVRQKETLKALRAEVDVLTLTATPIPRTLGMSLEGIR
DFSVIATAPQKRLAIKTFVRREDGSTIREALLRELKRGGQVYFLHNEVETIHNRRARLEE
LVPEARIAVAHGQMPERELEQVMKGFYQQRHNVLLCTTIIETGIDIPTANTIVIHRADRF
GLAQLHQLRGRVGRSHHQAYAYLLTPGEDAITNNAKKRLEAIQAMEELGSGFYLAMHDLE
IRGTGEILGDSQSGNIQEVGFSMYNEMLNEAVRALKAGEEPDLDAPFNLACEVNLHAPAL
LPSDYCPDVHGRLAIYKRLSHADGEDDLIRIQEELIDRFGKLPEAAQTLLATHRLRLAAQ
PLGIVKIDASETQALLQFGAKTTVDPLRIIELVQRQRHIKLSGQDKLRVEIKAPQIAARA
DAVRAVLRALK
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgcctgatctcactccgcccgccgtgcccatccccgccaccgccaccaccctgtccgcc
ctcaagccgggagcgcgctttacgcagccccgcccgcccggatccggcgacggatggctg
ctggcggacctggcgcgccaggccggcaagccgctggtggtgctgacggccgacccgctg
gaggcccagcggctggccgatgaaatcccgcaattcgcgcccgaactgcgcgtgcgccag
ttgcccgactgggaaaccctgccctacgacgcgttctcgccccaccaggacctgatctcg
caacgcctgcgcacgctgcacgcgctcatgaaccagggcgtggacatcctgaccgtgccg
gtcaccaccgccctgtaccgcctggcgccgcccgccttcctggccgcgtatacgttttcg
ttcaagcagaaggaccggctcgacgaagcggccctgcgcgcgcagctgacgctggccaac
tacagccacgtcacccaggtcaccgcgccgggcgaattctgcctgcgcggcggcctgatc
gacctgtttcccatgggttcggtggtgccctaccggctggacctgttcgacgacgagatc
gaatcgatccgcagcttcgacgtcgacacgcagcgcagcctgtatccggtgggcgaagtg
cagttgctgcccggccgcgagtttcccatggacgaagaggcgcgcaaccgcttccgggcg
cggtttcgcgaagtgttcgaaggcgacccctcccgcgccctgccgtacaaggacatcggc
aacggcatcgcgttcgccggcatcgagtattacctgcccctgttcttcgagcagaccgcc
accctgttcgattacctggcggccgacacgatcaccgtcacggtgggcgacatcgacgac
gccatgcagcgcttcgcccatgacacccgcagccgctacgactttctcaaggtcgaccgc
gaacggccggtgctgccgccggacaccctgttcctcgaccacgaggcgctgttcgcgcgc
ctgaaagacttcccgcgcctggccttgatggcggagcggccgcatccggacttcgccgcc
gcgcccgatgtcgccgtggcgcgccgcgccgacgaccccgtggcgcgcctgcgcgcgctg
ctggcgcagaccggcgaccgcgtgctgctgtgcgccgattcggccggccggcgcgagacg
ctggcgcaaatgctgggcgaacacggcctggcgcccgaggcgcaggccgattcgatccag
gccttcctggacgacggcgcgcgcttcggcctggccgtggcgccgctgtcggccggcttc
tgcgtgcccggcggcgccctgctgttcctgaccgagaacgacctctaccccggccatgcc
ggcgtcacccggcgcggcaagcgcacccaggaacgcaccagcaatgtcgaagccatggtg
cgcgacctggccgaactgcgcgccggcgacccggtggtgcacgcccagcacggcatcggc
cgctaccacgggctggtcaacatggacatgggcgaaggcgagatggagttcctgcatctc
gaatacgccagcggcagcacgctgtacgtgcccgtgtcgcagctgcacgtcatcgcccgc
tacagcggcgccgacccggacgccgcccccctgcaccagctcggttcgggccaatgggac
aaggcgcgccgcaaggcggccaggcaggtgcgcgacaccgcggccgaactgctggccctg
tatgcgcagcgcgccgcccgcgaaggctatgccttcaagctgcccatgagcgactacgaa
gccttcgccgaaggtttcggcttcgaggagacgcccgaccaggcggccgccatccaggcc
gtcatcatggacatgacctcgggccgccccatggaccggctggtatgcggcgacgtgggc
ttcggcaagaccgaggtcgcgctgcgcgccgccttcctggccgtggccaacggcaagcag
gtcgcgctgctgtgccccaccaccctgctggccgagcagcatgcccagacgttttccgac
cgcttcgccgactggccggtgcgcgtcgtggagctgtcgcgctttcgctccgccaaggag
gtggccgccgccgtcgaaggcatcaacgacggccgcgtggacatcgtcatcggcacgcac
aagatcctgtccaaggacgtgcgcttcaagcggctgggcctggtcatcatcgacgaggaa
caccgctttggcgtgcgccagaaggaaaccctcaaggcgctgcgcgccgaggtcgacgtg
ctgaccctgacggccaccccgatcccgcgcacgctgggcatgtcgctggaaggcatccgc
gacttctccgtgatcgcgacggcgccgcagaagcggctggccatcaagaccttcgtgcgg
cgcgaggacggcagcaccatacgcgaagcgctgctgcgcgagctcaagcgcggcggccag
gtgtatttcctgcacaacgaggtcgagaccatccacaaccggcgggcgcgcctcgaagaa
ctggtgcccgaggcccgcatcgcggtcgcccacggccagatgcccgaacgcgagctggaa
caggtcatgaagggcttctaccagcagcgccacaacgtgctgctgtgcaccaccatcatc
gaaaccggcatcgacatccccaccgcaaacaccatcgtcatccaccgcgccgaccgcttc
ggcctggcgcagctgcaccagctgcgcggccgcgtcggacgctcgcaccaccaggcctac
gcctatctgctgacgccgggcgaggatgccatcacgaacaacgccaagaagcgcctggag
gccatccaggccatggaagagctcggttcgggcttctacctggccatgcacgacctggaa
atccgcggcaccggcgaaatcctgggtgactcgcaatcgggcaacatccaggaggtgggc
ttctcgatgtacaacgagatgctcaacgaagcggtgcgggcgctgaaggcgggcgaggag
cccgacctggacgcgcccttcaacctggcctgcgaagtcaacctgcacgcgccggcgctg
ctgccgtcggactactgtcccgacgtgcatggccgcctggccatctacaagcgcctgtcg
catgccgacggcgaagacgacctgatccgcatccaggaagaactcatcgaccgtttcggt
aaactgcccgaagccgcgcagacgttgctggccacgcaccgcctgcgcctggccgcgcaa
ccgctgggcatcgtcaagatcgatgccagcgaaacgcaggccctgctgcagttcggtgcc
aagaccacggtcgaccccttgcgcatcatcgagctggtgcagcgccagcgccatatcaag
ctgtccggccaggacaaactgcgggtggagatcaaggcgcctcagatcgctgcccgcgcc
gacgccgtgcgcgccgtcctgcgcgcactgaaataa
DBGET
integrated database retrieval system
