Bordetella bronchiseptica RB50: BB4395
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Entry
BB4395 CDS
T00141
Name
(GenBank) conserved hypothetical protein
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
bbr
Bordetella bronchiseptica RB50
Brite
KEGG Orthology (KO) [BR:
bbr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bbr03016
]
BB4395
Enzymes [BR:
bbr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BB4395
Transfer RNA biogenesis [BR:
bbr03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
BB4395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
CAE34758
UniProt:
A0A0H3LSG6
LinkDB
All DBs
Position
4681129..4683012
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AA seq
627 aa
AA seq
DB search
MYVFYDDDGGFKAGNILSETDASLQVESETGKRSKIKRASTLFTFAAPEPAALMAQAATL
AEDIDLQFLWECAPQEEFDAPALAAEYFGHAPGPVEQAALLMRLHGAPAYFHRRGKGRYR
PAPPDILAAALAALEKKRLQAEQQQQWIDEMAQGRLPEAIALAAESLLVRPDKNSMQWKA
FDAACTQLQKTPERLLLDLGAWPHPLALHKRRFLAVNFPRGVGFPAMDVPSIERELPLAE
GEIYSVDDITTTEIDDALSVSALPDGKIRVGIHVAAPGLAITRGSEHDKLARTRLSTVYM
PGEKIPMQPDNVIQAFSLDAGRPVPAVSLYVTADPRTGAIEASETRLERIVVRENLRHND
LDAQISEAALADPDAPLAYGHWLRPLWQLAQALGAQREAVRGKPENNTRVEYSFYLDGSP
DDPDTPVRLVPRQRNAPLDRMVAEYMILANNIWGGLLNQHGVPGIYRSQQAGRVRMSTQA
LPHEAIGVPQYAWSTSPLRRYVDLVNQWQLIAAVEHGVSARLVAPFKPRDADLYAIIGAF
DAQYAAWADFQNAMERYWCMRWLKQQGISRTTAHVLREDLVRLANAPLVTRVGGLPELER
GAAVQIDIMNMDELALELDCRYLGPAD
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgtacgtgttttacgacgacgacggcggcttcaaggccggcaatatcctgtccgagacc
gacgccagcctgcaggttgagtcggaaacgggcaagcgcagcaagatcaagcgcgccagc
accctgttcaccttcgcggcgccggagccggccgcgctgatggcccaggcggccacgctg
gccgaggacatcgacctgcagttcctctgggagtgcgcgccgcaggaggaattcgacgcg
cccgcgctggcggccgagtacttcggccacgcccccggcccggtcgagcaggccgccctg
ctgatgcgcctgcacggcgcgccggcctatttccatcgccgcggcaagggccgctaccgc
ccggccccgcccgacatcctggccgccgccctggccgcgctggagaaaaagcgcctgcag
gccgaacagcagcagcagtggatcgacgaaatggcccagggccgcctgcccgaggccatc
gccctggcggccgaatcgctgctggtgcgtccggacaagaattcgatgcagtggaaggcg
ttcgacgccgcctgcacccagctgcagaagacgcccgagcgcctgctgctggacctgggc
gcctggccgcatccgctggcgctgcacaagcggcgcttcctggccgtgaacttccccagg
ggcgtgggatttccggccatggacgtgccgtcgatcgaacgcgaactgccgctggccgag
ggcgagatctactcggtcgacgacatcaccaccaccgagatcgacgacgcgctgtcggtc
agcgccctgcccgacggcaagatccgcgtcggcatccacgtcgccgcgcccggactggcc
attacgcgcggcagcgaacacgacaagctggcgcgcacccgcctgtccacggtctacatg
ccgggcgagaagattccgatgcagcccgacaatgtgatccaggcgttttcgctggacgcg
ggccggccggtgccggccgtgtcgctgtatgtcacggccgacccgcgcaccggcgcgatc
gaagcctcggaaacccgcctggaacgcatcgtggtgcgcgagaacctgcgccacaacgac
ctggacgcgcagatttccgaagccgcgctggccgatccggacgcccccctggcttatggc
cactggctgcggccgctgtggcagctggcgcaggcgctgggcgcgcagcgcgaagccgtg
cgcggcaagcccgaaaacaatacgcgggtcgaatacagcttctacctggacggcagcccg
gacgacccggataccccggtgcggctggtgccgcgccagcgcaacgcgccgctggaccgc
atggtggccgagtacatgatcctggccaacaacatctggggcggcctgctgaaccagcac
ggcgtgccgggcatctaccgctcgcagcaggccggccgggtgcgcatgagcacgcaggcg
ctgccgcacgaagcgatcggcgtgccgcaatatgcctggagcacctcgccgctgcgccgc
tatgtcgacctggtcaaccagtggcaattgatcgcggccgtcgagcacggcgtgtcggcg
cgcctggtggcgcccttcaagccgcgcgacgccgacctctatgccatcatcggcgcgttc
gacgcgcagtatgcggcctgggctgatttccagaacgccatggagcgctattggtgcatg
cgctggctcaagcagcagggaatcagccgcacgaccgcccacgtgctgcgcgaggacctg
gtgcgcctggccaacgcgccgctggtcacgcgcgtgggcggcctgcccgagctggaacgc
ggcgcggcggtgcagatcgacatcatgaatatggacgaactggcgctggagctggactgc
cgctacctggggccggcggactga
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