Bradyrhizobium brasilense CB627: QA636_05325
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Entry
QA636_05325 CDS
T09107
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bbra
Bradyrhizobium brasilense CB627
Pathway
bbra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QA636_05325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbra03019
]
QA636_05325
03009 Ribosome biogenesis [BR:
bbra03009
]
QA636_05325
Enzymes [BR:
bbra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QA636_05325
Messenger RNA biogenesis [BR:
bbra03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QA636_05325
Ribosome biogenesis [BR:
bbra03009
]
Prokaryotic type
rRNA helicases
QA636_05325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
WFU64966
LinkDB
All DBs
Position
1178764..1180812
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AA seq
682 aa
AA seq
DB search
MPFPTTSSPLARALAERNYDQPTPVQLAVLADDAVDRDLLVSAQTGSGKTVAYGLAMAKD
LLDGAERFEPAAAPLALIVAPTRELALQVQRELAWLYEHADGRVVSCVGGMDPRREQREL
AEGAHIVVGTPGRLCDHLRRGRLDISELKVVVLDEADEMLNLGFREDMEFILETTPDTRR
TLLFSATFPRGIVALAKQYQEQAFRIEVAGDEGGHADIEYRAIRVAADDVEHAVVNVLRF
HEAPSALVFCNTREAVRHLQAALLERGFSVAALSGEMTQNERTQALQALRDGRSRVCVAT
DVAARGIDLPSLDLVIHADLPKDPEVMQHRSGRTGRAGRKGVSILLVPPARRRRAELLLD
LAGIDVVWGSAPQAEEIRKLDHDRLLQDAVFSEEATSDDLALAQALLAERAPEAIAAALA
RLYRARLPAPEDILDPGEGRGRDRDDRRGERASRRDDRAAGPRSKTGKSSARHGMEEATV
WFRAAIGRRKNAEARWLLPMICRRGGIDKRDIGAIKIMDTTTEFEIAARVADSFAVKIKR
PDKEDSIRIEPLAGAPQGEVREKPARKPWRDDGDGGYSAPRAGGPRDEGAGKRRGKPDRE
ARAFSSEGASGSRQEYASKKESRDSFRSDRDGKGFRPKSGDEPRFGKKKKHPGKSSHAGP
TQWPDVSAKPKFGKKPKKKRRG
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
gtgccctttccgaccacaagttcgccgctcgcccgcgccttggctgagcgcaactacgat
caaccgaccccggtccagctcgccgtgctcgcggacgacgctgtggaccgcgatctcctg
gtttcagcccagaccggctcgggcaagaccgttgcctacggcttggccatggcaaaggac
ctgctcgacggtgccgagcggttcgagccggctgccgccccgctggccctgatcgtcgcg
ccgacccgcgagctcgccttgcaggtccagcgcgagcttgcttggctttatgaacacgcc
gacggccgcgtcgtctcctgtgtcggcggcatggacccgcgccgcgagcagcgcgagctt
gccgagggcgcccacatcgtggtcgggacgcccggccggttgtgcgaccatttgcggcgc
ggccgtctcgacatttcggaactcaaggtcgtcgtgctcgacgaggccgatgaaatgctc
aatctcggtttccgcgaggatatggaattcatcctcgagaccacgccggacacccgccgc
accttgctgttctcggcgacgtttccgcgcggcatcgtcgcgcttgccaagcagtatcag
gagcaggcgttccggatcgaggtcgcgggtgacgaaggcggccatgccgatatcgagtac
cgcgccatccgggtggctgccgacgatgtcgagcacgccgtcgtcaacgtgctgcgtttc
catgaggcgccgagcgcgctggtgttttgcaacacccgtgaggccgtccggcatttgcag
gcggcgctgctcgagcgcgggttctccgtcgccgcgctgtcgggcgaaatgacccagaac
gagcggacccaggcgctgcaggcgttgcgcgacgggcggtcgcgggtttgcgtcgcgacc
gacgtcgcggcgcgcggcatcgacctgccgagcctcgatctcgtcattcacgcggatctg
ccgaaagacccggaggtcatgcagcatcgctcgggccgtaccggccgcgccggccgcaag
ggcgtcagcatcctgctggtgccgccggcacggcggcggcgcgccgaattgctgctcgat
ctcgccggcatcgatgtggtctggggctccgcgccgcaggcggaggagatccgcaagctc
gaccatgatcgcctgctgcaggatgcggtgttctccgaggaggcgacatcagacgatctg
gcgctggcgcaggccttgctcgccgaacgcgcgcccgaggcgattgccgcagcgctcgcc
cggctctaccgcgcgcggctgcctgcgcccgaagacatcctcgatcccggcgagggacgc
ggccgggaccgcgacgatcgccgcggcgagcgcgcctcgcgccgcgatgatcgtgccgcc
gggccgcgatcgaagaccggcaagtcctccgcgcgtcacggcatggaggaggcgaccgtc
tggttccgcgccgcgatcggacgccggaagaacgccgaagcccgctggctgctgccgatg
atctgccgccgtggcggcatcgacaagcgcgacatcggcgcgatcaagatcatggatacg
accaccgagttcgagatcgccgcgcgggtcgcggattccttcgcggtcaagatcaagcgt
ccggacaaggaagacagcatccgcatcgagccgctggcgggcgcgccgcagggagaggtg
cgcgagaagccggcgcgcaagccctggcgcgacgatggcgacggcggatacagcgcgccg
cgcgccggggggccgcgcgacgagggggcgggaaagcggcgcggcaaaccggaccgcgag
gccagagcgttttcgagcgaaggcgcgagcggttcgcgtcaggaatacgcgtcaaagaag
gaatccagggactcgttccgatcagatcgggacggaaaaggcttcaggccgaaatccggc
gacgagccccggttcggaaagaaaaagaagcatccgggcaagtccagccacgccggaccc
acgcagtggccggacgtgtcggcgaagccgaagttcggcaagaagccgaagaagaagcgg
cggggctga
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