Bradyrhizobium brasilense CB627: QA636_19235
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Entry
QA636_19235 CDS
T09107
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bbra
Bradyrhizobium brasilense CB627
Pathway
bbra03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bbra00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QA636_19235 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bbra03021
]
QA636_19235 (rpoC)
03400 DNA repair and recombination proteins [BR:
bbra03400
]
QA636_19235 (rpoC)
Enzymes [BR:
bbra01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QA636_19235 (rpoC)
Transcription machinery [BR:
bbra03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QA636_19235 (rpoC)
DNA repair and recombination proteins [BR:
bbra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QA636_19235 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
RnfC_N
Peptidase_M23
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
WFU67501
LinkDB
All DBs
Position
4114542..4118744
Genome browser
AA seq
1400 aa
AA seq
DB search
MNQEIMNLFNPTTPAQVFDQIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCSVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGLLLDMTLKDLERILYFEYYVVLEPGLTALKDRQLLSEDEYLKAQDEYGQDSFTA
MIGAEAIRELLKGLELEKLEATLRADMAETDSDIKHKKLAKRLKIVEAFRVSGNKPEWMI
MTVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELRLHQCGLPKKMALELFKPFIYSRLDAKGLSTTVKQAKKLVEKERPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGQPIIVPSQDIVLGLYYVSIMREGLPGEGKIFGDMAELEHALH
SKVIHLHTKIKYRWEGLDEEGKHSKRWIETTAGRVMLGNLLPKNPKISYDIINKLMTKRE
ISGVIDQVYRHCGQKETVIFCDRIMALGFYNAFKAGISFGKDDMVVPASKWKIVDQTRTL
AKDFEQQYNDGLITHGEKYNKVVDAWSKAGEEVAKAMMKEISSTKKTAAGADADINSIYM
MAHSGARGSPAQMRQLAGMRGLMAKPSGEIIETPIISNFKEGLSVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIITQTDCGTTLGIKMRAIVDAGTVVASLGSRILGRVA
CDDVRDPATNEVVIKRDTLMEESHVDAIQQAGIQEVKIRSALTCELINGICAKCYGRDLA
RGTPVNHGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNEQSFVESNFDGKIVIKNKAI
ARNSEGSLIAMVRNMVVAIVDADGTERATHRIQYGSKMHVDEGDMVKRGQRIAEWDPYTR
PVLSEVEGTIGFEDLVEGQSISETLDESTGIAKRVVIDWRTTRGGSDLRPAIVVKGKDGK
VMKLARGGDARYMLSVDAILSVDTGGKVMPGDILARISTESAKTRDITGGLPRVAELFEA
RKPKDAAIIAETAGTIRFGRDYKNKRRISIEPMDKTEEPREYLIPKGKHIHLQDGDIVEK
GDFIVEGNPAPHDILAIKGIEELAAYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEV
TDQGDTDMISGEQVDKIEFDALNTKAKEEGKKPATGTPVLLGITKASLQTRSFFSAASFQ
ETTRVLTEAAVNGKVDPLEGLKENVIVGRLIPAGTGASMARIREVAVKRDKLILDEREKQ
QAAIVPTAPEAEPLALPPAE
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaagagattatgaatcttttcaatccgacgaccccggcccaggtcttcgaccag
atccggatttcgatcgcgtctccggagaagattctgtcctggtcctacggcgagatcaag
aagccggagaccatcaactaccgcaccttcaagccggagcgtgacggcctgttctgcgcg
cgcatcttcgggccgatcaaggactacgagtgcttgtgcggcaagtacaagcggatgaag
tacaagggcatcatctgcgagaagtgctcggtcgaggtgacgctgtcgcgcgtccggcgc
gagcgcatgggccatatcgagctggcggcgccggtcgcccacatctggttcctgaagtcg
ctgccctcgcgcatcggcctcctgctcgacatgacgctgaaggatctcgagcggatcctc
tacttcgaatactacgtcgtgctcgagccgggtctcaccgcgctgaaggaccgtcagctg
ctgtcggaagacgagtatctgaaggcgcaggacgagtacggccaggattccttcaccgcc
atgatcggcgcggaggcgatccgcgagctgctcaaggggctcgagctcgagaagctcgag
gcgacgctgcgtgccgacatggcggagaccgactccgacatcaagcacaagaagctcgcc
aagcgtctgaagatcgtcgaggctttccgcgtttccggcaacaagccggaatggatgatc
atgacggtcgtgccggtgattccgccggacctgcgtccgctggtgccgctcgacggcggc
cggtttgcgacctcggacctcaacgacctgtaccgccgcgtcatcaaccgcaacaaccgc
ctgaagcggctgatggagctgcgtgcgcccgacatcatcatccgcaacgaaaagcgcatg
ctgcaggaggccgtcgacgcactgttcgacaacggccgccgtggccgcgtcatcaccggc
gccaacaagcgtccgctgaagtcgctcgccgacatgctgaagggcaagcagggccggttc
cgccagaacctgctcggcaagcgcgtcgattattcgggccgttcggtgatcgtggtcggt
cccgagctgcgcctacatcagtgcggcctgccgaagaagatggcgctcgagctgttcaag
ccgttcatctactcgcggctcgatgccaagggcctgtccaccacggtgaagcaggccaag
aagctggtcgagaaagagcgtccggaggtctgggatatcctcgacgaggtgatccgcgag
catccggtgctgctcaaccgcgcgccgacgctgcatcgcctgggcatccaggcgttcgag
ccggtgctgatcgaaggcaaggcgattcagctgcatccgctggtctgcgccgccttcaac
gccgacttcgacggcgaccagatggccgtgcacgttccgctgtcgctcgaagcgcagctg
gaagcgcgcgtcctgatgatgtcgaccaacaacatcctgcatccggcgaacggccagccg
atcatcgtgccgtcgcaggacatcgtgctcggcctctactacgtctcgatcatgcgcgaa
ggcctgcccggcgagggcaagatcttcggcgacatggccgagctcgagcacgccctgcat
tcgaaggtcatccacctccacaccaagatcaagtaccggtgggaaggcctcgacgaggaa
ggcaagcactccaagcgctggatcgaaaccaccgcgggccgcgtcatgctcggcaacctg
ctgccgaagaacccgaagatctcgtacgacatcatcaacaagctgatgaccaagcgcgag
atctccggcgtgatcgatcaggtctaccggcactgcggtcagaaggagacggtgatcttc
tgcgaccgcatcatggcgctcggcttctacaacgccttcaaggcgggcatctcgttcggc
aaggacgacatggtcgtgccggcgtcgaagtggaagatcgtcgatcagacccgtacgctg
gcgaaggatttcgagcagcagtacaatgacggcctgatcacccatggcgagaagtacaac
aaggtcgtcgacgcctggtcgaaggccggtgaagaagtcgccaaggcgatgatgaaggag
atctcgtccaccaagaagacggcggcgggcgcggatgccgacatcaactcgatctacatg
atggcgcactccggtgcgcgtggttcgccggcccagatgcgccagctcgccggcatgcgc
ggcctgatggccaagccgtcgggcgagatcatcgagacgccgatcatttccaacttcaag
gaaggtctgtcggtgctcgagtacttcaactcgacccacggcgcccgcaagggcctcgcg
gacaccgcgttgaagaccgcgaactcgggctacctgacccgccgtctggtcgacgtcgcg
caggactgcatcatcacgcagaccgactgcggcaccacgctcggcatcaagatgcgcgcc
atcgtcgacgccggcaccgtggtcgcctcgctcggctcgcgcatcctgggccgcgtcgcc
tgcgatgacgtgcgcgatcccgccaccaacgaggtcgtcatcaagcgtgacaccttgatg
gaggagagccacgtcgacgcgatccagcaggccggcatccaggaagtgaagatccgctcg
gcgctgacctgcgagctgatcaacggcatctgcgccaagtgctacggccgcgacctggcc
cgcggcaccccggtcaaccacggtgaggccgtcggcgtcatcgcggcacaatcgatcggt
gagcccggcacgcagctgacgatgcgcacgttccacatcggcggcgccgcccagctcaac
gagcagtcgttcgtcgaatcgaacttcgacggcaagatcgtgatcaagaacaaggcgatc
gcccgcaacagcgaaggcagcctgatcgcgatggtgcgcaacatggtcgttgcgatcgtc
gatgccgacggcaccgagcgtgcgacccaccgtattcagtacggttcgaagatgcacgtc
gacgaaggcgatatggtcaagcgcggccagcgcatcgccgagtgggatccctatacccgc
ccggtgctgagcgaggtcgagggcacgatcggtttcgaggatctggtcgagggacagtcg
atctcggaaacgctcgacgagtcgaccggtatcgccaagcgcgtggtcatcgactggcgc
acgacgcgcggcggttcggacctgcgtccggccatcgtggtcaagggcaaggacggcaag
gtgatgaagctcgcgcgtggcggcgatgcccgctacatgctgtcggtcgacgccattctg
tcggtcgacaccggcgggaaggtgatgccgggcgacatcctggcgcgtatctcgaccgag
agcgccaagacgcgtgacatcaccggcggtctgccgcgggtggcggaactgttcgaggct
cgcaagccgaaggatgcggcgatcatcgcggagaccgcgggaacgatccgcttcggccgc
gactacaagaacaagcgccgcatctcgatcgagccgatggacaagaccgaggagccgcgc
gagtacctgatcccgaagggcaagcacatccaccttcaggacggcgacatcgtcgaaaag
ggcgatttcatcgtcgaaggcaatccggcgccgcacgacatcctggcgatcaagggcatc
gaggagctcgctgcctatctggtcaacgaaatccaggaggtctaccggttgcagggcgtg
cttatcaacgacaagcacatcgaggtgattgtccgtcagatgctgcagaaggtcgaggtc
accgatcagggcgacaccgacatgatctcgggcgagcaggtcgacaagatcgagttcgac
gcgctcaacaccaaggccaaggaggagggcaagaagcccgccacgggtacgccggttctg
ctcggcatcaccaaggcgagcctgcagacccgctccttcttctcggcggcgtcgttccag
gagaccacgcgcgtgctcaccgaagctgccgtcaacggcaaggtggacccgctcgagggc
ctcaaggagaacgtcattgtcggccgcctgatcccggccggcaccggcgcttcgatggcg
cggatccgcgaggtcgcggtcaagcgcgacaagctgatcctcgacgagcgcgagaagcag
caggcggcgatcgtgccgacggctccggaagcggagccgctggcgctgccgcccgccgaa
tag
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integrated database retrieval system
