Bradyrhizobium brasilense CB627: QA636_21670
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Entry
QA636_21670 CDS
T09107
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bbra
Bradyrhizobium brasilense CB627
Pathway
bbra03030
DNA replication
bbra03430
Mismatch repair
bbra03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bbra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QA636_21670 (dnaE)
03430 Mismatch repair
QA636_21670 (dnaE)
03440 Homologous recombination
QA636_21670 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bbra03032
]
QA636_21670 (dnaE)
03400 DNA repair and recombination proteins [BR:
bbra03400
]
QA636_21670 (dnaE)
Enzymes [BR:
bbra01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
QA636_21670 (dnaE)
DNA replication proteins [BR:
bbra03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
QA636_21670 (dnaE)
DNA repair and recombination proteins [BR:
bbra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
QA636_21670 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
HROB
T2SSK
HHH_3
DUF6374
Motif
Other DBs
NCBI-ProteinID:
WFU60186
UniProt:
A0ABY8J3S5
LinkDB
All DBs
Position
4592992..4596516
Genome browser
AA seq
1174 aa
AA seq
DB search
MPNAGFVHLHVHSAYSLLKGSIKIAKLGELAKADRQPALALTDTDNMFGALEFSDKMAGY
GIQPIVGCELAVDFGDVDPNTRSILATTGPARIVLLAARERGYRSLMRLNSRAFLETPVN
QTPHIKFDWLIDDAEDLIALTGGPDGPIALALRAEQAALAITRCERLAGLFGDRLYIELQ
RHGADKERRTEGGLIDLAYSKGLPLVATNEPYFASNDDYESHDALLCIAGGHLIAETNRE
QLTPDHRFKTRAEMAVLFADIPEALASTVEIAERCSFRPKTRKPILPFFTVGAAASADAA
ADEAAELKRQAEEGLANRLRVHGLSPGMTEEDYSKRLAFELDVITRMKYAGYFLIVSDFI
KWAKAQGIPVGPGRGSGAGSLVAWVLTITDLDPMRFALLFERFLNPERVSMPDFDIDFCQ
DRRGEVIQYVQERYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQNPA
APVTLAQAIEGEPKLQAFRDEDPVVARAFDIAQRLEGLTRHASTHAAGIVIGDRPLSELV
PLYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVAVKLLKQRNVHVDLATLPI
DDAPSYQMLARGDVVGVFQVESQGMRRALIDMRPDRFEDIIALVALYRPGPMANIPTYCA
RKHGDEESEYLHPILEPILKETFGVIIYQEQVMQIAQQMAGYSLGQADLLRRAMGKKIRA
EMDKQRDIFVDGAMKNGVAKGQAETIFELLAKFADYGFNKSHAAAYALVSYHTAYMKAHY
PVEFLAASMTLELNNTDKLSEFRSEAQRLGIKVEAPNINRSGATFEVSDNTIYYALAALK
GVGIQAVEQIIEERNKKGAFTSLADFAARVSPRAVNKRIIESLAAAGAFDTLEPNRARVF
AGADAILAACQRSHEAATSGQNDMFGGAADAPSIMLPQIEPWLPADRLRREYDAIGFFLS
GHPLDDYATALKRLRVQSWAEFSRAVKTGATAGKVAATVVSRMERRTKTGNKMGIMGLSD
PTGHFEAVLFSEGLAQYRDVLEPGAAVLLQLGAELQGEDVRARVLHAEPLDHAAAKTQKG
LRIFVRDTKPLESIARRLNMPEAAPAPGGAAKAPAVKPAAAPPPAAGADGDVSLVMMLDL
ETEVEMKLPGRYKVSPQIAGAIKAVAGVVDVQTL
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgccgaatgccggattcgttcaccttcacgttcattccgcttattcgctgctgaagggc
tcgatcaagatcgccaagctgggcgagctcgcgaaggccgaccgccagccggcgctggcg
ctgaccgataccgacaacatgttcggcgcactggaattctcggacaagatggccggctac
ggcatccagccgatcgtcggctgcgagctggcggtggatttcggcgacgtcgatccgaat
acgcggagcatccttgcgacgacgggcccggcgcgaatcgtgctgctggcggcgcgcgag
cgcggctaccgcagcctgatgcggctgaactcgcgggcgttcctggagacgccggtcaac
cagaccccgcacatcaagttcgattggctcatcgacgacgccgaggacctgatcgcgctg
accggcggccccgacggcccgatcgcgctggcgctccgggccgagcaggcggcgctggcg
atcacccgctgcgaacgcctggccggcctgttcggcgatcgcctctacatcgaattgcag
cgccacggcgccgacaaggaacgccgcaccgaaggcggcctgatcgatctcgcctacagc
aagggcctgccgctggtggcgaccaacgagccgtattttgccagcaatgacgactacgaa
tcgcatgacgcgctgctctgcatcgccggcggccatctgattgccgagaccaaccgcgag
caactgaccccggatcaccgcttcaagacccgcgcggaaatggcggtgctgttcgccgac
atcccggaggcgctggcctcgacggtggagatcgccgagcgctgctcgttccggccgaag
acccgcaagccgatcctgccgttcttcacggtgggtgccgccgccagcgccgatgccgcc
gccgacgaggccgccgagctgaagcgccaggccgaggaggggctcgcgaatcgcctgcgg
gtgcacggtctctcgccgggaatgaccgaagaggactacagcaagcggcttgccttcgag
ctcgacgtcatcacccgcatgaaatacgcgggctacttcctgatcgtctccgacttcatc
aaatgggcgaaggcgcagggcattccggtcgggccgggccgcggctccggcgccggctcg
ctggtcgcctgggtgctgaccatcaccgacctcgatccgatgcggtttgcgctgctgttc
gagcgcttcctcaatcccgaacgcgtctcgatgccggacttcgacatcgacttctgccag
gaccgccgcggcgaggtgattcagtacgtgcaggagcgctacggccgcgaccaggtggcg
cagatcatcaccttcggtacgctgcaggcgcgcggcgtgctgcgcgacgtcgggcgcgtg
ctgcagatgccctatgggcaggtggacaagctgaccaagctggtgccgcagaatcccgca
gcgccggtgacgctggcgcaggcgatcgagggcgagcccaagctgcaggcgttccgcgac
gaggatccggtggtggcgcgtgcgttcgatatcgcgcagcgtctcgaaggcctgacgcgc
catgcctcgacgcatgccgccggtatcgtgatcggcgaccggccgctgagcgagctggtg
ccgctctaccgcgatccgaaatccgacatgccggtcacccaattcaacatgaaatgggtc
gagccggcgggcctcgtgaaattcgacttcctcggcctgaagacgctgaccgtgctggac
gtcgcggtgaagctgctcaagcagcgcaacgtccatgtcgatctcgcgacgctgccgatc
gacgatgcgccgagctatcagatgctggcgcggggcgatgtcgtcggcgtgttccaggtg
gaaagccagggcatgcggcgcgcgctgatcgacatgcggccggaccgcttcgaggacatc
atcgcgctggtggcgctgtatcgcccgggcccgatggcgaacatcccgacctattgcgcg
cgcaagcacggcgacgaggaatcggaatatctgcatccgatcctggagccgatcctgaag
gagaccttcggcgtcatcatctatcaggaacaggtgatgcagatcgcgcagcagatggcg
ggctactcgctcggccaggccgacctgctgcgccgcgcgatgggcaagaagatccgcgcc
gagatggacaagcagcgcgacatcttcgtcgacggtgcgatgaagaacggcgtggcgaag
ggccaggccgagacgatcttcgagctgctcgccaagttcgccgactacggcttcaacaag
agccacgcggcggcctatgcgctggtgtcgtaccacaccgcctatatgaaggcgcactac
ccggtcgagtttttggcggcgtcgatgacgctcgaactcaacaacaccgacaagctgtcc
gaattccgctccgaggcgcagcggctcggcatcaaggtcgaggcgcccaacatcaatcgc
tccggcgcgaccttcgaggtcagcgacaacacgatctactacgcgctggcggcgctgaag
ggcgtcggcatccaggcggtcgagcagatcatcgaggagcgcaacaagaagggcgccttc
acctcgctcgccgatttcgccgcgcgggtgagcccgcgcgccgtcaacaagcggatcatc
gagagccttgcggcggccggcgccttcgacacgctggagccgaaccgcgcgcgcgtcttc
gccggcgccgatgcgatcctcgccgcctgccagcgcagccatgaggcggcgacctcgggc
cagaacgacatgttcggcggcgcggcggatgcgccgagcatcatgctgccgcagatcgag
ccgtggctgcccgccgaccggctgcggcgcgaatacgacgccatcggctttttcctgtcg
ggccatccgctcgacgactacgccaccgcgctgaagcggctgcgcgtgcagtcctgggcg
gagttctcgcgcgcggtgaagaccggcgccaccgccggcaaggtcgcggcaaccgtcgtg
tcccgcatggagcgccgcaccaagaccggcaacaagatgggcatcatgggcctgtcggac
ccgaccggccatttcgaagcggtgctcttctcggaaggccttgcgcaataccgcgacgtg
ctcgaaccgggagcggccgtgctgttgcagctcggcgccgagctgcagggcgaggacgtg
cgggcgagggtgctgcacgccgagccgctggatcacgccgcggccaagacgcagaagggc
ctgcggatcttcgtgcgcgacaccaagccgctggagtcgatcgcccgccggctcaacatg
ccggaagccgcgcctgccccgggcggcgccgcaaaggcaccggccgtgaagccggccgcc
gcgccgccaccggcggcgggggccgatggcgacgtctcgctggtgatgatgctggacctc
gaaaccgaggtggagatgaagctgcccggccgctacaaggtctcgccgcagatcgccggc
gcgatcaaggcggttgccggcgtggtcgacgtgcagaccctgtaa
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