Bradyrhizobium brasilense CB627: QA636_22995
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Entry
QA636_22995 CDS
T09107
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bbra
Bradyrhizobium brasilense CB627
Pathway
bbra03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bbra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QA636_22995 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbra03400
]
QA636_22995 (mfd)
Enzymes [BR:
bbra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QA636_22995 (mfd)
DNA repair and recombination proteins [BR:
bbra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
QA636_22995 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
UB2H
SecA_DEAD
RecG_dom3_C
AAA_16
AAA_22
AMT4_dom_C
Motif
Other DBs
NCBI-ProteinID:
WFU60426
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All DBs
Position
complement(4869305..4872823)
Genome browser
AA seq
1172 aa
AA seq
DB search
MKQPMKSPAAMLAPGRVLTIANVAEGAEGLVISDLARAIAAQPKRPAVSLAVVCRDGTRM
QQLARALEFFAPDIAVMQVPAWDCQPYDRVSPHSGILAQRLTALAKLSRLVGSDKPLIVL
TTVNAAVQRVPARDQVAAQALSVAPGNVVPMDSVVAWLEHNGYTRSSTVREPGEYAVRGG
ILDLFPAGLDQPVRFDFFGDSLESIRTFDAETQRTLLDMRGLDLVPVSEFQLTTETIRRF
RMGYVAAFGAPGRDDQLYEAVSEGRRHPGMEHWLPLFQERMDTLFDYLDGATVAIEPQGE
DAARERFSQIVDYYDARREALEHPGSGAVYKPLPPDQLYLTEAEWTKLLGDAPLARLTPF
AVPEGTPDVFDAGARQGRNFAPERADSNVNVFEAVVGHVGALQSQRKKVVIALWSEGSRD
RMGAMLRDHKLLNTTSVNTWRIVQATPRNETMLAVLGMESGFETDEFAVISEQDILGDRL
VRPRKASRKLDNFISEVTSLATGDLVVHVEHGIGRFVGLQTLEVSGAPHDCLELHYAAET
KLFLPVENIELLSRYGSDSANVELDRLGGGGWQARKAKLKNRIREIAGELIKIAAERQLH
EAPKFPLQPHVYDEFCARFPYEETEDQLGAITSTLKDLEIGRPMDRLICGDVGFGKTEVA
LRAAFAVALEGRQVAVVVPTTLLARQHSRTFTERFRGFPVNVAQASRLVSTKELNQVKKG
LTDGNVDIVVGTHALLGKTIKFKDLGLLIVDEEQHFGVSHKERLKQLRAQVHVLTLSATP
IPRTLQLALTGVRELSIIASPPVDRLAVRTFVAPHDPLMIREALLRERYRGGQAFYVVPR
IEDLAGVKDFLDKNVPEMKVAVAHGQMPPTVIEDIMSAFYDGKYDILLSTTIVESGLDIP
NANTLIVHRADMFGLAQLYQLRGRVGRSKLRAYALFTLPAQQKITAQAERRLKVLQSLET
LGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQSMLEEAIVNLKAGVAEPAADRW
SPQITIGMPVLIPDDYVNDLSVRLSLYRRLADLDTDEDIDAFAAEMRDRFGVLPDEVRYL
FKVAAIKAYCRRANVGKVDAGPKGAVIAFRDNSFAHPERLVSFIRQHGQAAKVRPDMKVV
FFQEWDTPEERLAGTTEILRQLANLAESKKAA
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgaaacagccgatgaaatcaccggccgcgatgctcgcgcccggccgggtgctgaccatc
gccaacgtcgccgagggcgccgaagggctcgtcatctccgacctggcgcgcgcgatcgcg
gcgcagccgaagcggccggcggtcagccttgccgtggtgtgccgtgacggcacgcggatg
cagcagctcgcccgcgcgctggagttctttgcgcccgatatcgccgtgatgcaggttccg
gcctgggactgccagccctacgaccgcgtctcgccgcattccggcattttggcgcaacgg
ctcaccgctttggccaagttgtcgcggctggtcggcagcgacaagccgctgattgtgctc
accacggtgaatgcggccgtgcagcgggtcccggcgcgcgatcaggtcgcagcgcaagcg
ctgtcggttgcgcccggcaatgtggtgccgatggattcggtcgtggcctggctcgagcac
aatggctacacccgctcgtccacggtgcgcgagcccggcgaatatgccgtgcgcggcggc
atcctcgatctgtttccggccggcctcgaccagccggtgcgcttcgacttcttcggcgac
agcctggaatcgatccgcaccttcgatgccgagacccagcgcacgctactcgacatgcgc
gggctcgatctcgtgccggtgtcggaattccagctcaccaccgaaaccatccggcgtttc
cgcatgggctatgtcgccgcgttcggcgcgccggggcgcgacgatcagctctatgaagcc
gtctccgagggacggcgtcaccccggcatggagcattggctgccgctgttccaggagcgg
atggacacgctgttcgattatctcgacggggcgacggttgcgatcgagccgcagggcgag
gacgcagcgcgcgaacgcttctcgcagatcgttgactactatgacgcacggcgcgaggcg
ctggagcatccgggcagcggcgcggtctacaagccgctgccgccggaccagctctatctg
accgaggccgaatggaccaagctgctcggcgatgcgccgctggcgcggctgacgccgttc
gcggtgcccgaaggcacgcccgacgtgttcgacgccggcgcgcggcagggccgcaacttc
gcccccgaacgcgccgacagcaatgtcaacgtgttcgaggccgtggtcggccatgtcggc
gcgctgcagtcacagcgcaagaaggtggtgatcgcgttgtggagcgagggctcgcgcgac
cgcatgggcgcgatgctgcgcgaccacaagctcctgaacacgaccagcgtcaacacctgg
cggatcgtgcaggcgacgccgcgcaacgaaaccatgctggcggtgctcggcatggaatcc
ggcttcgagaccgacgagttcgccgtcatcagcgagcaggacattctcggcgaccgcctg
gtgcggccgcgcaaggcgagccgcaagctcgacaatttcatctcggaggtgacgagcctt
gcaaccggcgatctcgtggtccatgtcgagcacggcatcggccgcttcgtcgggctgcag
acgctggaagtctccggcgcgccgcatgactgtctcgagttgcattatgccgccgaaaca
aaactgttcctgccggtcgagaacatcgagctgttgtcgcgctatggctccgacagcgcc
aatgtcgagctcgaccgtctcggcggcggcggctggcaggcacgcaaggccaagctgaag
aaccggatccgcgagatcgcgggcgaattgatcaagatcgcggccgagcggcagctgcac
gaggcgccgaaattcccgctgcagccgcatgtctatgacgagttctgtgcgcgcttcccc
tatgaggagaccgaggatcagctcggggccatcacctcgaccttgaaggacctcgagatc
ggccgcccgatggaccggctgatctgcggcgatgtcggcttcggcaagaccgaggtggct
ctgcgcgcggcgttcgccgtggcgctggagggcaggcaggtcgcggtggtggtgccgacc
acgctgctggcgcgtcagcactcgcgtactttcaccgagcgcttccgcggcttcccggtc
aatgtcgcgcaggcctcgcggctggtgtcgaccaaggagctcaaccaggtcaagaagggg
ctcaccgacggcaacgtcgacatcgtcgttggcacccatgcgctgctcggcaagaccatc
aagttcaaggacctcggcctgttgatcgtggacgaggagcagcatttcggcgtcagccac
aaggagcggctgaagcagttgcgcgcccaggtccatgtgctgacgctgtcggcgaccccg
atcccgcgcacgcttcagcttgcattgaccggcgtccgcgagctctcgatcattgcttcg
ccgccggtcgatcgccttgcggtgcgcaccttcgtcgcgccccacgatcccctgatgatc
cgcgaggcgctgctgcgcgaacgctaccgcggcgggcaggcgttctatgtcgtgccgcgg
atcgaagacctcgccggcgtcaaggatttcctcgacaagaacgtgccggagatgaaggtc
gcggtcgcccacggccagatgccgccgaccgtgatcgaggacatcatgtccgcgttctac
gacggcaagtacgacatcctgctctcgaccacgatcgtcgagtccggtctcgacatcccg
aacgccaatacgttgatcgtgcaccgcgccgacatgttcggcctcgcccagctctaccag
ctgcgtggccgcgtcggccgctccaagctgcgcgcctatgcgctgttcacgctgccggca
cagcagaagatcacggcgcaggcggagcggcggctcaaggtgctgcagtcgctggagacg
ctgggcgccggcttccagctcgcctcgcacgacctcgacatccgcggcgccggcaatctg
ctcggcgaagagcaatccggccacatcaaggaagtcggcttcgagctgtaccagtcgatg
ttggaggaggcgatcgtcaacctcaaggccggcgtcgccgagccggccgccgaccgctgg
tcgccgcagatcacgatcggcatgccggtcctgatccccgatgactatgtcaacgacctc
agcgtgcggctgtcgctgtatcgccggctcgccgatctcgacaccgacgaggacatcgac
gccttcgccgccgaaatgcgcgaccgcttcggcgtgctgccggacgaggtgcgctatctg
ttcaaggtcgcggcgatcaaggcctattgccgaagggccaatgtcgggaaggtcgacgcc
ggcccgaagggcgccgtgatcgcattccgcgacaacagctttgcccatccggagcggctg
gtgagcttcatccgccagcacggccaggccgccaaggtgcggcccgacatgaaggtggtg
ttcttccaggaatgggatactccggaagagcggctcgccggcaccaccgagatcctgcgc
cagctcgccaacctcgccgagagcaagaaggcggcttaa
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