Bradyrhizobium brasilense CB627: QA636_39595
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Entry
QA636_39595 CDS
T09107
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bbra
Bradyrhizobium brasilense CB627
Pathway
bbra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QA636_39595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbra03019
]
QA636_39595
Enzymes [BR:
bbra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QA636_39595
Messenger RNA biogenesis [BR:
bbra03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QA636_39595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
AAA_22
SUa-2TM
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
WFU63436
LinkDB
All DBs
Position
8493025..8494455
Genome browser
AA seq
476 aa
AA seq
DB search
MTSFQDFGLADPIARALREENYLTPTPIQAQTIPLALAGRDVVGIAQTGTGKTASFALPI
LHRLLENRVRPQPKSCRVLVLSPTRELSGQILDSFNTYGRHIRLSSTLAIGGVPMGRQVR
SLMQGVEVLVATPGRLLDLVQSNGLKLNQVEFLVLDEADRMLDMGFINDIRKIVAKLPIR
RQTLFFSATMPKDIAELAEAMLRDPARVAVTPVASTVDRIAQRAIQVDFAAKPTVLAQLL
KQEPVNRALVFTRTKHGADKVVKSLAKAGIEANAIHGNKSQNHRERTLAAFRSGEIRTLV
ATDIAARGIDVDGVSHVVNFDLPNIPETYVHRIGRTARAGADGVAISLIAGAEEMGYLRD
IERLIRITVPREDRRTQGSSSGGREAAGPAQATHPHRGGRSAPRAHNVRGNEAAPGAKGP
RRRRRRGGNNGAPQTSRGESPRPSQAGNSEGIQGVAFLHRESRPNPQSNRNNRPKH
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
ttgacctcctttcaggatttcggcctcgccgatcccatcgcccgcgcgctccgagaagaa
aattatctcacgccgacccccatccaggcccagaccatcccgctagcccttgccggccgc
gacgtcgtcggcatcgcccagaccggcaccggcaagaccgcctccttcgcgctgccaatc
ctgcaccggctgctggagaaccgcgtccgcccgcagcccaagagctgccgcgtgctggtg
ctctcgccgacccgtgaactgtccgggcagatcctcgacagtttcaacacctatggccgc
cacatccggctgtcctcgacgctcgccatcggcggcgtgccgatgggccgccaggtccgc
tccctgatgcagggcgtcgaggtgctggtcgccacccccggccgcctgctcgatctcgtg
cagagcaacgggctgaagctcaaccaggtcgagttcctggtgctcgatgaagccgaccgc
atgctcgacatggggttcatcaacgacatccggaaaatcgtcgccaagctgccgatccgg
cgccagacgctgttcttctcggccaccatgcccaaggacatcgccgagctcgccgaggcg
atgctgcgcgacccggcccgcgtggcggtgacgccggtggcctcgacggtggatcgcatc
gcccagcgcgcgatccaggtcgatttcgcggccaagccgacggttctcgcccagttgctg
aagcaggagccggtcaaccgcgccctggtcttcacccgcaccaagcacggcgccgacaag
gtggtgaaaagccttgccaaggccggcatcgaggccaatgcgatccacggcaacaagtcg
cagaaccaccgcgagcgcacgctggcggcgttccgttccggcgagatccgcacgctggtg
gcgaccgatatcgccgcccgcggcatcgacgtcgacggcgtcagccacgtggtgaatttc
gacctgcccaatatcccggagacctacgtccaccgcatcggccgcacggcgcgcgccggc
gccgacggcgtcgcgatctcgctgatcgccggtgccgaggagatgggctatctgcgcgat
atcgagcggctgatccggattaccgtgccgcgggaagaccgccgcacacaaggcagctcc
tctggcggccgcgaggccgccgggccggcgcaggccacccacccgcaccggggcggccgc
tctgcgccccgtgcgcataatgtccgtgggaatgaggccgctccgggcgcaaaaggccct
cgccgccgccgccgtcgaggtggtaataatggcgcgccgcagacgagccggggcgagtcg
ccgcgtccgtcgcaggccggcaacagcgaaggcattcagggcgtcgccttcttgcatcgc
gagagccggccgaatccgcaatccaaccgcaacaaccgaccgaagcactag
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