Bifidobacterium breve JCM 7019: B7019_0459
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Entry
B7019_0459 CDS
T03121
Name
(GenBank) ATP-dependent DNA helicase, UvrD/REP family
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
bbrc
Bifidobacterium breve JCM 7019
Pathway
bbrc03420
Nucleotide excision repair
bbrc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bbrc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B7019_0459
03430 Mismatch repair
B7019_0459
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbrc03400
]
B7019_0459
Enzymes [BR:
bbrc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B7019_0459
DNA repair and recombination proteins [BR:
bbrc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
B7019_0459
MMR (mismatch excision repair)
Other MMR factors
B7019_0459
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
XdhC_CoxI
DEAD
Motif
Other DBs
NCBI-ProteinID:
AHJ18768
LinkDB
All DBs
Position
565793..569728
Genome browser
AA seq
1311 aa
AA seq
DB search
MSAFIPSVEQAAIINAPAQDDVLVVAGAGSGKTFTMTQRIIALINRGVAPERILGLTFTR
KAAGELLERVSAAVSREDSPAAQGAQTPGASTPNFDRAFLKPAIFTYDAFFQTIVRQYGL
LVGFDQNTQPLSEAGALQLATEVIDEHMDQALSEDLGTFTSLARSVLALSGAIGSAMIGS
GCTGFDEAVERVRQWDSAFVDALRLALENEDIPDIEPTIPKIKRLKKDSDTDWQAKLDDR
AQRLHARCAYHCAQLLEITRKREVLLQLVEAYAQAKRQKNMAEFSDFTIAAYQLIERFPS
IGERTRCRYSHVLLDEYQDTSTTQAALLAALFHVNNSERCAVNAVGDPFQSIYAWRGASP
GAFRMFQRDFHMPAESKPFPLSVTRRNSRIVLEAANDLTLPLRSRPARPSSSLMREVDVS
SLDPMPDAPEGTLGVLGLATAGQEIDAVVRFCKAAIARYRDAGAAQEAPVAVLFRSKSHM
PEYQEVLEKAGLTTFVVGYSALLERPEIRDVLALLHVVADHTDTGALMRLLATPRFGLSS
DDLTALACAAEAQNMEQRFRALVQAGVAPADTPRSQWGAVVREHRDQVANAVFLPDLLMQ
DNSSVRLDQLSAYGRHAVEQAVEALRQVHDMVGRSITDVIRAAIEALNLDIDTVLAGALR
DPQHRVNPSLARMPMDSIVDLVDTYTQEIAVEQTPTLRGFMAWVDHLATVEDEAAKLPGS
PVDVELMTVHQSKGLEWDAVAVVGLNAGGFPSNQGDHLKVVLDDNHPGGTEQGQWTAPEY
HESADSWLTSPVAVPVPVRADAGILPRFPHDADVHGDPIDSLRNLDDVELIDDEVFGSMR
EFGDGVEEVDPQSWYLTQSEEYGRRLHADERRLAYVALTRARNDALLTYCRYTGESSRDC
TNVPKGSRAASPSNFWLEVHDALHGHDHAIEVQAYVEGLGSEVALVSPQGDPIDPPEGFI
VGENAEQYCDAVVGDAWRTPLEQTSGRNALPWPASLGEDTAEHLTRGLALVRNAINGKRN
AKDDGHNPAGPLLQRAQLLVDDDDLMTGTLEGAALDRAVKAKAQRILAAGRQNVTSLQAR
VGGMSQQEERSYWRSVIRPIPRVSSPAAEAGTRFHDWAERFINAGKPDEAASSVDSSAAE
IITTGNGVSRSDLLADLNAIDQQSVPVCDRNLMIWQHRLASSSWAQRTPVWAERSIVVDV
PEVGIVNGKLDAVFLGGINPADTSKRYTVVDWKTGHRPTKPDDVEHKLAQLDMYRLLLAA
VEGVELDSIDATLYYVSEPDEGLRELHARAKTKQEILTELSSGIPEQSDND
NT seq
3936 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcttttattcccagcgtagaacaggcggccatcatcaacgctcccgctcaggat
gacgtactggtggtggccggagccggctctggcaaaacctttacgatgacccaacgcatc
atcgcgctcatcaaccgcggtgttgcgccggaacgcatactgggcctcacctttacccgc
aaagctgccggagagttgctcgagcgtgtatccgcagcggtgtcgcgcgaagattctcct
gcagcacagggcgctcagactcctggcgcctcaactcccaacttcgacagggcgttcctg
aaaccagccatttttacctatgatgccttcttccaaaccatcgtgcgccaatatggtctg
ttggttggtttcgatcagaatactcagccactcagcgaggctggagcgctccagctcgcc
actgaagtcatcgatgagcatatggatcaggctctgagcgaggatttgggcacattcacc
agtcttgccagaagcgtgctggcattatccggtgcaatcggcagtgccatgattggttcc
ggctgcaccggattcgatgaggctgtggaacgcgtgcgtcagtgggactcggctttcgtc
gacgcgcttcgcctcgctcttgagaacgaggacattcccgatatcgagccgacaattccc
aagatcaagcgactcaaaaaagacagcgacaccgattggcaggcgaagctggacgacagg
gcgcagcggttgcatgcgcgctgtgcctaccattgtgcacaactgttggaaatcacgcgc
aagcgcgaagtgctgctgcaattggtcgaggcctacgcacaagccaaacgccagaagaac
atggcggaattctctgatttcaccattgcggcatatcagctcatcgagcgattcccctcc
atcggagagcgtacgcggtgtcgctacagtcatgtgctgctcgacgaataccaggacacc
tccaccacgcaggcggcactgcttgccgcattgttccatgtgaataactccgaaaggtgc
gcggtcaacgccgtaggcgatccgttccagtccatctatgcttggcgaggagccagcccg
ggtgcgttccgcatgttccaacgtgactttcatatgccagcggagtccaagccattccct
ctttcggtcacacgccgtaacagtcgcatcgtgcttgaagcggccaacgatctgacgctg
ccgttgcgttcgcgccctgcccgtccctccagttcgttgatgcgcgaggtcgacgtatcc
tcgcttgaccccatgcctgacgcgcctgaaggcacgcttggtgtgttgggattggccact
gcggggcaggaaatcgatgccgtagtgcgcttctgcaaggccgccatcgcgcggtatcgc
gatgccggggccgcgcaggaggcgccggtcgccgtgctgttccggtccaaatcccatatg
cccgagtatcaggaggtattggagaaggccggtctcaccacgtttgtggtcggatattcc
gctctgctggagcgcccagaaatccgcgatgtgctggcattgctgcacgtcgttgccgac
cataccgataccggagcgttgatgcggttgcttgccactccacggttcgggctttcttcg
gatgacctgaccgcactggcctgcgccgccgaagcgcagaatatggagcaacggttccgg
gctttggtacaggccggtgtggctcctgctgatacgccgaggtcgcaatggggtgccgtg
gttcgcgaacatcgcgatcaggtggccaatgcagtgtttttgccggatctgctgatgcag
gataattccagtgtgaggttggatcagctcagtgcttacggtagacatgccgtcgaacag
gctgtggaggcactgcgtcaggtgcacgatatggtcggccggtcaatcacagatgtgatt
cgtgcggccatcgaggcgttgaatctcgatatcgataccgtgcttgccggtgctttgcga
gacccgcagcatcgtgtcaatccatcgctggcccgcatgcccatggactccattgtggat
ttggtggatacctatacgcaagagatcgctgttgaacagacgcccacattacgtggattc
atggcatgggtggatcatcttgccactgtggaagacgaggctgccaaactgcctggctct
ccggtggatgtggaattgatgaccgtgcaccaatccaagggattggaatgggatgcggtt
gccgtagtggggcttaatgccggaggatttcccagcaatcagggggatcacctcaaagtc
gtgctggatgacaaccatcccggtggcactgaacaaggccaatggacagctcccgaatac
cacgagagcgcggattcgtggttgaccagccctgtggccgtaccggtgcccgtacgagcc
gatgccggaatcctgccgcgattccctcatgacgccgatgtgcatggcgatcccattgac
tcgttgcggaatctcgacgacgtggaactcatcgatgatgaggtgttcggctccatgcgc
gaattcggcgatggcgtggaagaggtggatccgcaaagctggtacctgacccaatccgag
gaatatggccgcaggctgcacgctgacgaacgccgtttggcatatgtggcgcttacccgc
gcccgcaacgacgccttgctgacctattgccgctataccggcgaatccagccgcgattgc
acgaacgtgccgaaggggtctcgcgccgcaagcccgtccaacttctggcttgaggtgcat
gacgcgttgcatggccacgaccatgcaatcgaagttcaggcatacgtggaaggtctggga
tccgaagtggcgctggtctcgccccagggtgatcccattgatcctcccgaaggcttcatc
gtgggggagaacgccgaacagtactgtgatgctgtggttggcgacgcatggcgtacgccg
ctggaacagacctccggccggaatgcattgccatggccggcgtcattgggcgaagacacc
gcggaacatctgacccgcggtctcgccttggtgcgtaatgccatcaacggaaagcgcaac
gcaaaagacgacggccacaacccggccggtccattgctgcaacgtgcgcaattgctggtc
gatgacgacgatctcatgaccggcacattggagggtgcggcactcgacagggccgtcaaa
gccaaagcccagcgcattctggctgcgggacgtcagaacgtcaccagcttgcaggcgcgg
gtgggtggtatgagccaacaggaggagcgctcctactggcgcagcgtgatacggcccatc
cctcgcgtgtcctcgccggctgccgaagcgggcacacgcttccacgactgggccgagcgt
ttcatcaatgccggtaagccggatgaggccgcatcgtcggttgattccagcgccgccgaa
atcattaccaccggcaatggcgtatcccgcagcgacctattggccgacctgaacgccatc
gaccaacaatccgtaccggtctgcgaccggaacctcatgatatggcagcaccgtctggcc
tcgtcttcatgggcgcaacgcaccccggtatgggccgaacgctcaatcgtggtggatgtg
ccggaagtcggcatcgtgaacggcaaattggacgcggtgttcctcggcggaatcaatcca
gccgatacctccaaacggtacaccgtggtcgattggaaaaccggtcatcggcctaccaag
ccggatgatgtggagcataaactcgctcagctcgacatgtatcggttactgctcgccgcg
gtcgagggcgtggaattggacagtatcgacgccactctctactatgtcagtgagcctgat
gaaggcttgcgcgagcttcatgcccgcgcgaaaaccaaacaggaaatccttaccgagttg
agctccgggatccccgaacaatctgacaacgactga
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