Bifidobacterium breve JCM 7019: B7019_1064
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Entry
B7019_1064 CDS
T03121
Name
(GenBank) Excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
bbrc
Bifidobacterium breve JCM 7019
Pathway
bbrc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bbrc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B7019_1064
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbrc03400
]
B7019_1064
DNA repair and recombination proteins [BR:
bbrc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
B7019_1064
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
B7019_1064
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
nSTAND1
AAA_16
AAA_29
AAA_21
RsgA_GTPase
AAA_23
AAA_15
APS_kinase
DnaJ_CXXCXGXG
Mtrc-MtrF_II-IV_dom
IIGP
Viral_helicase1
cobW
Cytochrome_C7
Cytochrom_c3_2
Motif
Other DBs
NCBI-ProteinID:
AHJ19340
LinkDB
All DBs
Position
1216849..1219878
Genome browser
AA seq
1009 aa
AA seq
DB search
MAAAQTGTKRATGGAGAKTGKGKNGEVIVEKVMTSDSFLNREIKKAPLVEHDGSLVADIS
HIPNDLKITIQGAREHNLKNVDLAIPRNRMVVFTGLSGSGKSSLAFDTLFAEGQRRYVES
LSAYARQFLGQMDKPDVDFIEGLSPAVSIDQKTTNRNPRSTVGTITEIYDYLRLLFARTG
IPHCPECGEPVASQTPQQIVDTLLDYPERTRFQILAPVVKGRKGEFVDMLELLRSDGYAR
ALIDGEMKQLSDDIKLTKQKKHTIEVVVDRLVVKDGIRQRLTDSVETALKLANGSIVIDF
VDEEEGSPARRRPFSEHRSCPNGHVLELDEVEPRTFSFNAPYGACPACTGLGFKLEIDPE
LVISDPDKSLADGVIEPWSGTKMTSQYYGHILEGLAKEMGFSMKTPWKDLPADVKHDILY
GHDFKVNVSYRNRWGRLREYSTGFEGVVRTLMRRHDETDSQSMREYYESYMREVPCQVCQ
GRRLKPEVLAVTVDGKSIFDVCDMPVVRELAWVNGLKLEGSAQMIAGEVLKEIKARLGFL
NDVGLDYLTLSRAAATLSGGEAQRIRLATQIGSGLVGVMYVLDEPSIGLHQRDNERLIET
LHHLRDLGNTLIVVEHDEDTIRQADWLVDIGPGAGEHGGEVIYSGPAKHLIEAKRSITGD
YIAHRREIAVPAKRRKVRKTQMLKVVGARENNLKNIDVSFPLGVLTVVTGVSGSGKSSLV
NSILYPVLADKLNGARIVPGKHTRVEGVDQVRKVIHVDQNPIGRTPRSNPATYTGVWDKI
RALFAKTPEAQVRGYGPGRFSFNVKGGRCEACHGDGTLKIEMNFLPDVYVECETCHGKRY
NRETLEVTYNGKTVSDILDMPIEEAANFFKAYTGISRYLKTLVDVGLGYIRLGQPAPTLS
GGESQRVKLATELQRRSDGKTVYILDEPTTGLHFEDVNKLLKVLQSLVDKGNTVIVIEHN
LDVIKEADWLIDLGPEGGDGGGTIVTQGTPEQVAECDESWTGKFLKPML
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
gtggcggcagctcagactggcacaaagcgcgcaactggcggagcgggcgcgaaaaccggc
aagggcaagaatggcgaagtcatcgtggaaaaggtgatgaccagcgactcattcctgaac
cgcgaaatcaaaaaagcgccgctcgtcgagcatgacggttcgctggtagcggacatctcg
cacatcccaaacgacctcaagatcaccattcagggcgcacgagagcacaacctgaagaac
gtggatcttgcgattccgcgcaaccgcatggtcgtgttcaccggcctgtccggttccggc
aaatcatcgctcgcgttcgacaccttgttcgccgaaggccagcgccggtacgtcgaatcc
ctgtccgcctacgcccgccagttcctaggccagatggacaagcccgacgtcgacttcatc
gaaggcctgagcccagccgtctccatcgatcagaagaccaccaaccgcaacccgcgttcg
accgtcggcaccatcaccgaaatctacgattacctacgactgctattcgcccgcaccggc
atcccgcactgccccgaatgtggcgagccagtcgcctcccagaccccgcagcaaatcgtc
gacaccctgcttgattacccggaacgcacgcgattccagattctcgcgcccgtggtcaag
ggccgtaaaggcgagttcgtggatatgcttgaactgttgcgctccgacggttatgcccgc
gcgctcatcgacggcgaaatgaagcagctgtccgacgacatcaaactcaccaagcagaag
aagcacaccatcgaagtggtggtcgaccgacttgtggtcaaggacggcatccgacagcgc
ctgaccgactcggtggaaaccgcgctgaagctcgccaatggcagcatcgtcatcgatttc
gtggacgaggaggaaggcagccccgcgcgccgccgcccgttctccgaacaccgcagctgt
ccgaatggtcatgtgctcgaactcgatgaggtcgaaccgcgcacgttctccttcaacgcc
ccctacggcgcctgcccggcctgcaccggtctcggcttcaaactcgaaatcgacccggag
ctcgtgatctccgacccggataaatccctggccgacggtgtcattgagccgtggagcggc
accaagatgacctcccagtactacggccacatccttgaaggtctggccaaggaaatgggc
ttctctatgaagaccccgtggaaggatctgccggccgacgtcaagcacgacatcctctac
ggccatgacttcaaagtcaacgtctcctaccgcaaccgttggggtcgcctgcgcgaatac
tccaccggctttgagggcgtggtgcgcacgctgatgcgccgccacgacgaaaccgactcg
cagtccatgcgcgaatactacgagtcctacatgcgcgaggtaccttgccaggtctgccaa
ggccgccgcctgaagcccgaagtgctcgcggtcaccgtggatggcaaatccatcttcgac
gtgtgcgatatgcccgtcgtgcgcgagctcgcctgggtcaacgggctcaaactcgaaggc
tcggcacagatgattgctggcgaagtcctgaaagagatcaaggcgcgcctcggcttcctc
aatgacgtcggactcgactatctgaccctttcacgcgcggcagccaccctgtccggcggt
gaagcgcagcgcatccgactcgccacgcagatcggctccggtctggtcggcgtcatgtac
gtgctcgacgagccttccatcggcctgcaccagcgcgacaacgaacgactcatcgaaacc
ctgcatcatctgcgcgaccttggcaatacgctgatcgtggtcgaacacgatgaagacacc
atccgtcaggccgactggctggtcgacatcggccccggagccggcgagcatggcggcgaa
gtcatctactccggcccagccaagcacctcatcgaggcgaagcgttccatcaccggcgac
tacatcgcccaccgtcgcgaaatcgccgtgcccgccaaacgccgcaaggtgcgcaagacc
cagatgctcaaggtcgtaggcgcacgtgagaacaacctcaagaacatcgacgtgagcttc
ccgctcggcgtgctcaccgtggtcaccggtgtctccggctccggcaaatcctcgcttgtc
aactcgatcctctacccggtgctcgccgacaagctcaacggcgcacgcatcgtgcccggc
aagcatacgcgcgtcgaaggcgtcgaccaggtgcgcaaagtgatccacgtcgatcagaac
ccgatcggccgcactccacgctccaacccagccacctataccggcgtgtgggacaagatt
cgtgcactcttcgccaaaacccccgaagcacaggtgcgcggctacggccccggccgattc
agcttcaacgtcaagggaggccgctgtgaagcctgccacggcgacggcacgctgaagatc
gaaatgaacttcctgcctgacgtctacgtggaatgcgagacctgccacggcaaacgatac
aaccgtgaaaccctcgaagtcacgtacaacggcaaaaccgtttccgatatcctcgatatg
cccatcgaagaggcagccaacttcttcaaggcctacaccggcatttcccgatatctgaag
accttggtggacgtgggcctcggatacatccggctcggccagcccgcgcccaccctgtcc
ggcggtgaatcgcagcgcgtcaaactcgccaccgaactgcaacgccgttccgacggcaag
accgtgtacatcctcgacgagccgaccaccggtctgcacttcgaagatgtaaacaagctg
ctcaaagtgctgcaatccctagtggacaagggcaatacggttattgtcatcgaacataat
ctggacgtgatcaaggaggccgattggttgattgatcttggtccggaaggcggtgacggc
ggcggcaccatcgttacgcagggcactcctgagcaggttgccgaatgcgacgaatcctgg
accggcaagttcctgaaaccgatgctatag
DBGET
integrated database retrieval system
