Bifidobacterium breve DSM 20213 = JCM 1192: BBBR_0154
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Entry
BBBR_0154 CDS
T04525
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
bbrd
Bifidobacterium breve DSM 20213 = JCM 1192
Brite
KEGG Orthology (KO) [BR:
bbrd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bbrd03032
]
BBBR_0154
03400 DNA repair and recombination proteins [BR:
bbrd03400
]
BBBR_0154
Enzymes [BR:
bbrd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
BBBR_0154
DNA replication proteins [BR:
bbrd03032
]
Prokaryotic type
DNA Topoisomerases
BBBR_0154
DNA repair and recombination proteins [BR:
bbrd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
BBBR_0154
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
BAQ99192
UniProt:
D4BLX7
LinkDB
All DBs
Position
210684..213734
Genome browser
AA seq
1016 aa
AA seq
DB search
MATKLVIVESPTKAHKIGDYLGKGYTVMASVGHIRDLAQPSQVPAADKPKFGKFGVDVND
GFKPYYIVDGDKKRTVSELKSALKGADELYLATDEDREGEAIAWHLVQTLKPKVPVRRMV
FHEITKDAINASLSKTRDVDSHMVDAQETRRILDRLYGYELSPVLWRKVGPGLSAGRVQS
VATRLIVERERERMAFKRAPYWDVVATLAAPDALGERTEFAARMISLGGKRLAGSKDFGS
DGQLTPDGFAGSVRQLDEASATAVAEALKNADFTVMSMETKPYRRRPQPPFTTSTLQQTA
GNRLGMGSRAVMRAAQSLYENGYITYMRTDSVTLSQEAITAARNAVSYHFGDKFLSAEPK
QYATKTAGAQEAHECIRPAGSRFHDPDELASKLPIDQLRLYTLIWQRTLACQMADATGST
ATVRLSAPAGPADGEAVFQASGTVIEFPGFMKATGEGRKPKPAAADAAAADKSGAKATKS
DASESNASLPPMEVGQRVEASDIEPDGHETQPPARYTEATLVKTLEAKEIGRPSTYASII
STIMDRGYVYERGRALIPSWLAFSVTKLLETNFPKLVDYTFTAEMENGLDRIAHGEETGR
DWLTHFYFGSGEGAARNADEAHEGLQQQVAQLGEIDARAINTIDIGDGLHVRVGRYGPYL
EDMEHLDAEGNPKRASLPDTIAPDELTVEVAHDLTDNHSGGPRELGKDPVSGGTVEVRNG
RFGPYVALVPPEGAADSAAAAPAGKKSSKKAAAAASRPRMASLFKTMSPESLSLEDALKL
LSLPREVGKYEETNAETGEVSECTVAANNGRYGPYLTKTSADGRSDTRSLGSEDEIFTVD
IDKAKELFAQPKYGRGRGRGAAKPPLRDLGNDPNTGKHVTIKDGRFGAYITDGETNRTVP
RQYTPESIAPEDAFRLLAEKRAAGPSTRGRRGRERAGAAKSGARGAKKGAASAATNAAEA
KRAGRRAEVKKLANKGWSNQRIAEKLSSTAATVKKDVDWLTANEGYERPAVIPKRG
NT seq
3051 nt
NT seq
+upstream
nt +downstream
nt
atggctaccaagctcgtgattgtggagtccccgaccaaggcccacaaaatcggtgactat
ctgggcaagggatacaccgtcatggcatcggtcggccatattcgcgaccttgcgcaaccc
agccaggtgcccgcggccgataaacccaagttcggcaagttcggcgtggacgtcaacgat
gggttcaagccctactacatcgtggatggcgataagaagcgcacggtaagcgagctgaaa
tccgccctgaagggcgccgacgagctctatctggcgactgatgaggatcgcgagggcgag
gccatcgcatggcatctggtgcagacgctcaagcccaaggtgccggtcaggcgcatggtg
ttccacgagatcaccaaggacgccatcaacgcctcgctaagcaaaacgcgcgatgtcgac
agccatatggtcgacgctcaggagacccgccgtattctcgaccgactctacggctacgag
ctgtccccagtgctgtggcgcaaggtggggccgggcctgtccgccggccgcgtgcagtcc
gtggccacccgactgattgtggagcgcgagcgcgagcgtatggcgttcaagcgtgcgcct
tactgggatgtcgtcgccacgctggccgcgcctgacgctttgggcgagcgcaccgagttc
gcggcccgcatgatctcgttgggcggcaagcgactcgccggatccaaggacttcggctcg
gatggccagctgactcccgatggttttgcgggcagcgttcgccagcttgatgaggcttca
gccaccgccgtggccgaagcgctgaagaatgccgacttcaccgtgatgtcgatggagacc
aagccgtaccgccgccgcccgcagccgccgttcaccacctccaccctgcagcagaccgcg
ggaaatcgcctcgggatggggtctcgcgcagtgatgcgtgcagcacagagcttgtacgag
aacggctacatcacatacatgcgaaccgattcggtgacgctttcgcaggaggccatcacc
gccgcccgcaacgccgtctcctaccatttcggcgacaagttcctctccgccgagcccaag
cagtacgccaccaaaaccgctggcgcgcaggaagcccacgagtgtattcgcccggcggga
tcccgattccatgaccccgatgagctggcctccaagctgcccattgaccaactgcgcctg
tacacgctgatctggcagcgcacgctggcatgccagatggccgacgccaccggatcgacc
gccaccgtgcgcctgtctgcgccggctggtcccgccgatggtgaggctgtattccaggca
tccggcacagtcatcgaatttcctggctttatgaaggccaccggcgagggccgcaagccc
aaacccgccgcagccgacgcggcggccgccgataagtcgggtgccaaggcgaccaagtcc
gatgcctccgaatccaatgcttccctaccgccgatggaggtgggccagcgggtcgaggct
tccgacatcgagccggatggccacgaaacccagcctccggctcgatacaccgaagccacg
ctggtcaagacgttggaagccaaggagatcggccgcccgtccacctatgccagcatcatc
tccacgattatggatcgcggctatgtgtatgagcgtggccgtgcgctgatccccagctgg
ctggcattctccgtgaccaagctgctggaaacgaacttccccaagctggtcgattacacg
ttcaccgctgagatggaaaacggcctcgatcgcattgctcacggcgaggagactggccgg
gattggctgacccacttctacttcggctccggcgagggcgcggcccgcaatgccgacgaa
gcgcatgaaggcctgcagcagcaggtggcccagcttggcgagatcgacgcccgagccatc
aacaccattgacatcggcgacggcctgcatgtgcgcgttggccggtacggcccgtatctg
gaagatatggagcatctggatgccgaaggcaacccgaagcgtgcctccctgccggacacc
atcgcgccggacgagctgaccgtcgaagtggctcatgatctgaccgacaaccattccggt
ggcccgcgcgagctgggcaaggacccggtttccggcggcaccgtggaagtgcgcaatggt
cggttcgggccgtatgtggcgttggtgccgcctgagggtgccgccgattccgccgccgct
gcgccggccggcaagaagagctccaagaaggccgcggccgctgcgtcgcgtccgaggatg
gcctcgctgttcaagaccatgagccccgaatcgctctcgttggaagatgcgttgaagctg
ctgagcctgccgcgcgaggtgggcaagtatgaagaaaccaacgccgagaccggtgaggtt
tccgaatgcacggtggccgccaacaacggtcgctatggtccgtatctgaccaagacgagc
gccgacggcaggtcggatacccgttcgttgggctccgaagatgagatcttcaccgtggac
attgacaaggccaaggagctgttcgcccagcccaagtacgggcgtggccgcggacgtggc
gccgccaagccgccgctgcgtgatttgggcaacgacccgaacaccggcaagcatgtgacc
atcaaggatggccgctttggcgcttacatcaccgatggcgagaccaatcgcacggtgccg
cgccaatacacgccggagtcgattgcgccggaggatgcgttccgtctgcttgccgaaaag
cgcgcggctggaccctccacccgtggccgccgcggccgtgagcgtgccggtgccgcgaag
tcgggagccaggggagccaagaagggcgctgcttcggctgcgaccaatgccgccgaggcc
aagcgcgccggacgccgtgccgaggtgaagaagctggcgaacaagggctggtccaaccag
cgcattgccgaaaagctcagctccaccgccgccaccgtgaagaaggatgtcgactggctg
accgccaacgagggctacgagcgccccgccgtaattcccaagcgtggctga
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