Bifidobacterium breve DSM 20213 = JCM 1192: BBBR_0240
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Entry
BBBR_0240 CDS
T04525
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
bbrd
Bifidobacterium breve DSM 20213 = JCM 1192
Pathway
bbrd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBBR_0240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bbrd03021
]
BBBR_0240
03019 Messenger RNA biogenesis [BR:
bbrd03019
]
BBBR_0240
Transcription machinery [BR:
bbrd03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
BBBR_0240
Messenger RNA biogenesis [BR:
bbrd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BBBR_0240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
Spore_III_AA
PIP5K
SAP
NACHT
Motif
Other DBs
NCBI-ProteinID:
BAQ99278
LinkDB
All DBs
Position
313558..315534
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AA seq
658 aa
AA seq
DB search
MANSQNLEDMKLPELKELAKQMGLRGTSTMRKPELLATLQAARSGGEPPAGVTVRTPKAD
KAVTKAAKAEPVVEETVALAEPQLDLSALAEEPKAAEPRRVRRKAADEATEEPRDARHRR
DDERTGRKPRKQADEAGDLLASLDLGETTAPERRRNRRDDTEAPLIRRVHDEDQPRRRRR
PADSSDETVRDLDDILATLPTQKHDEPSDDGEQSEDREFSRRSRNRDRDRDNRNDRNDRR
NRRMRGRDRGENAGEDDRRFDDRENRNDRREEPQEDLVPVAGIVDVLDSYAFVRTSGYLP
GPNDVYVSMGQVKKYGLRKGDAVHGSIRAPRENDRRNQRQKFVPLQSIDSINGQSVEDAL
NRPQFSKLTPLYPQERLKQETAPNKLTGRIMDIVSPIGKGQRGLIVSPPKAGKTITLQNI
ANAIAANNPEVHLMVVLVDERPEEVTDMERTVQGEVISSTFDRPASDHTTVAELAIERAK
RLVELGQDVVVLLDSMTRLARAYNIAAPASGRILSGGVDAQALYPPKKFFGAARNIENGG
SLTIISSALVETGSKMDEVIFEEFKGTGNMELRLSRELADKRLFPAIDINASGTRREELI
TDPQELPIIYRLRRLLGGMEPEQAYQTLVPRLKKTATNRDFLAAIVQQANTGNAVNGN
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaatagccagaatcttgaggatatgaagctgcctgagctcaaggagctcgccaag
caaatgggtctgcgaggcacgtctaccatgcgcaagcccgaactgctcgccaccttgcag
gccgcccgcagtggcggtgagccgccggctggcgtcactgtgcgcactcccaaggccgac
aaggccgtcaccaaggcagccaaggctgagccggtcgtcgaagagaccgttgctctggcg
gaaccgcagcttgatctatccgcacttgccgaagagcccaaggccgcggagccccgtcgt
gtgcgccgtaaggcagccgatgaggccactgaagaaccgcgcgatgcccgtcatcgccgc
gatgatgaacgaaccggccgcaagccgcgcaagcaggccgatgaggccggcgatctgctc
gcctccctcgatttgggcgagacaaccgctcccgagcgccgccgcaaccgtcgtgatgac
accgaagctccgctcattcgccgtgtgcatgatgaggatcagccgcgtcgccgtcgccgt
cctgcggacagcagcgacgagaccgtgcgcgatttggatgacattctggccacgctgccc
acgcagaagcacgacgaaccttccgacgatggtgaacagagcgaagaccgcgagttcagc
cgtcgcagccgtaaccgtgaccgagatcgcgacaaccgcaatgatcgcaatgaccgccgc
aaccgccgtatgcgtggtcgtgaccgtggcgaaaacgccggcgaggacgatcgtcgtttc
gatgatcgcgagaaccgcaatgaccgccgcgaggagccgcaggaagacctggtaccggtg
gccggtatcgtcgatgtgctcgattcctatgcgttcgtgcgtacgtccggctatctgcct
ggcccgaacgacgtgtacgtctccatgggccaggtcaagaagtatggcctgcgcaagggc
gatgccgtgcacggttccattcgagccccgcgcgagaacgatcgccgcaaccagcgtcag
aagttcgtgccgctgcagtccattgactcgattaacggccagagcgtcgaggacgcactg
aaccgtccgcagttctccaaactcaccccgctctacccgcaggagcgcctcaagcaggag
accgcgccgaacaagctcactggccgcatcatggatatcgtttccccgatcggcaagggc
cagcgtggtctgatcgtctccccgcctaaggccggtaaaaccatcaccctgcagaacatc
gccaatgccattgccgccaacaaccccgaggttcacctgatggtggtgctcgtggacgag
cgacctgaagaggtcaccgatatggagcgcacggttcagggtgaggtcatctcctccact
ttcgatcgtcctgcttccgaccacaccaccgttgctgagctggccatcgagcgcgccaag
cgtcttgtggagctcggccaggatgtcgtagtgctgctcgattccatgacccgtctggcc
cgtgcctacaacatcgcggctccggcttccggtcgtatcctgtccggtggtgtggatgcc
caggcgctctacccgccgaagaagttctttggtgcggcccgcaacatcgaaaacggcggc
tccctgaccatcatctcctcggcgctggtggaaaccggctccaagatggacgaggtgatt
ttcgaggagttcaagggtaccggcaacatggagcttcgcctctcccgagagctggcggac
aagcgcttgttcccggccatcgacatcaacgcctccggcacccgccgcgaagaactcatc
accgacccgcaggagctgccgattatctatcgtctgcgccgactgctgggtggcatggag
cctgagcaggcctaccagaccctggtgccgcgtctcaagaagaccgccacgaaccgcgac
ttcctagccgctatcgtgcagcaggccaacaccggcaacgcggtcaacggcaactga
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