Bifidobacterium breve 12L: B12L_0424
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Entry
B12L_0424 CDS
T03118
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
bbre
Bifidobacterium breve 12L
Pathway
bbre03420
Nucleotide excision repair
bbre03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bbre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B12L_0424
03430 Mismatch repair
B12L_0424
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbre03400
]
B12L_0424
Enzymes [BR:
bbre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B12L_0424
DNA repair and recombination proteins [BR:
bbre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
B12L_0424
MMR (mismatch excision repair)
Other MMR factors
B12L_0424
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
XdhC_CoxI
DEAD
Motif
Other DBs
NCBI-ProteinID:
AHJ15212
LinkDB
All DBs
Position
555275..559210
Genome browser
AA seq
1311 aa
AA seq
DB search
MSAFIPSVEQAAIINAPAQDDVLVVAGAGSGKTFTMTQRIIALINRGVAPERILGLTFTR
KAAGELLERVSAAVSREDSPAAQGAQTPGASTPNFDRAFLKPAIFTYDAFFQTIVRQYGL
LVGFDQNTQPLSEAGALQLATEVIDEHMDQALSEDLGAFTSLARSVLALSGAIGSAMIGS
GCTGFDEAVERVRQWDSAFVDALRLALENEDIPDIEPTIPKIKRLKKDSDTDWQAKLDDR
AQRLHARCAYHCAQLLEITRKREVLLQLVEAYAQAKRQKNMAEFSDFTIAAYQLIERFPS
IGERTRCRYSHVLLDEYQDTSTTQAALLAALFHVNNSERCAVNAVGDPFQSIYAWRGASP
GAFRMFQRDFHMPAESKPFPLSVTRRNSRIVLEAANDLTLPLRSRPARPSSSLMREVDVS
SLDPMPDAPEGTLGVLGLATAGQEIDAVVRFCKAAIARYRDAGAAQEAPVAVLFRSKSHM
PEYQEVLEKAGLTTFVVGYSALLERPEIRDVLALLHVVADHTDTGALMRLLATPRFGLSS
DDLTALACAAEAQNMEQRFRALVQAGVAPADTPRSQWGAVVREHRDQVANAVFLPDLLMQ
DNSSVRLDQLSAYGRHAVKQAVEALRQVHDMVGRSITDVIRAAIEALNLDIDTVLAGALR
DPQHRVNPSLARMPMDSIVDLVDTYTQEIAVEQTPTLRGFMAWVDHLATVEDEAAKLPSS
PVDVELMTVHQSKGLEWDAVAVVGLNAGGFPSNQGDHLKVVLGDNHPGGTEQGQWTAPEY
HESADSWLTSPVAVPVPVRADAGILPRFPHDADVHGDPIDSLRNLDDVELIDDEVFGSMR
EFGDGVEEVDPQSWYLTQSEEYGRRLHADERRLAYVALTRARNDALLTYCRYTGESSRDC
TNVPKGSRAASPSNFWLEVHDALHGHDHAIEAQAYVEGLGSEVALVSPQGDPIDPPEGFI
VGENAEQYCDAVVGDAWRTPLEQTSGRNALPWPASLGEDTAEHLTRGLALVRNAINGKRN
AKDDGHNPAGPLLQRAQLLVDDDDLMTGTLEGAALDRAVKAKAQRILAAGRQNVTSLQAR
VGGMSQQEERSYWRSVIRPIPRVSSPAAEAGTRFHDWAERFINAGKPDEAASSVDSSAAE
IITTGNGVSRSDLLADLNAIDQQSVPVCDRNLMIWQHRLASSSWAQRTPVWAERSIVVDV
PEVGIVNGKLDAVFLGGINPADTSKRYTVVDWKTGHRPTKPDDVERKLAQLDMYRLLLAA
VEGVELDSIDATLYYVSEPDEGLRELHARAKTKQEILTELSSGIPEQSDND
NT seq
3936 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcttttattcccagcgtagaacaggcggccatcatcaacgctcccgctcaggat
gacgtactggtggtggccggagccggctctggcaaaacctttacgatgacccagcgcatc
atcgcgctcatcaaccgcggtgttgcgccggaacgcatactgggcctcacctttacccgc
aaagctgccggagagttgctcgagcgtgtatccgcagcggtatcgcgcgaagattctcct
gcagcacagggcgctcagactcctggcgcctcaactcccaacttcgacagggcgttcctg
aaaccagccatttttacctatgatgccttcttccaaaccatcgtgcgccaatatggtctg
ttggttggtttcgatcagaatactcagccactcagcgaggctggagcgctccagctcgcc
actgaagtcatcgatgagcatatggatcaggctttgagcgaggatttgggcgcattcacc
agtcttgccagaagcgtgctggcattatccggtgcaatcggcagtgccatgattggttcc
ggctgcaccggattcgatgaggctgtggaacgcgtgcgtcagtgggactcggctttcgtc
gacgcgcttcgcctcgctcttgagaacgaggacattcccgatatcgagccgacaattccc
aagatcaagcgactcaaaaaagacagcgacaccgattggcaggcgaagctggacgacagg
gcgcagcggttgcatgcgcgctgtgcctaccattgtgcacaactgttggaaatcacgcgc
aagcgcgaagtgctgctgcaattggtcgaggcctacgcacaagccaaacgccagaagaac
atggcggaattctctgatttcaccattgcggcatatcagctcatcgagcgattcccctcc
atcggagagcgtacgcggtgtcgctacagtcatgtgctgctcgacgaataccaggacacc
tccaccacgcaggcggcactgcttgccgcattgttccatgtgaataactccgaaaggtgc
gcggtcaacgccgtgggcgatccgttccagtccatctatgcttggcgaggagccagcccg
ggtgcgttccgcatgttccaacgtgactttcatatgccagcggagtccaagccattccct
ctttcggtcacacgccgtaacagtcgcatcgtgcttgaagcggccaacgatctgacgctg
ccgttgcgttcgcgccctgcccgtccctccagttcgttgatgcgcgaggtcgacgtatcc
tcgcttgaccccatgcccgacgcgcctgaaggcacgcttggtgtgctgggattggccact
gcggggcaggaaatcgatgccgtagtgcgcttctgcaaggccgccatcgcgcggtatcgc
gatgccggggccgcgcaggaggcgccggtcgccgtgctgttccggtccaaatcccatatg
cccgagtatcaggaggtattggagaaggctggtctcaccacgtttgtggtcggatattcc
gctctgctggagcgcccagaaatccgcgatgtgctggcattgctgcacgtcgttgccgac
cataccgataccggagcgttgatgcggttgcttgccactccacggttcggtctttcttcg
gatgacctgaccgcactggcctgcgccgccgaagcgcagaatatggagcaacggttccgg
gctttggtgcaggccggtgtggctcctgctgatacgccgaggtcgcaatggggtgccgtg
gttcgcgaacatcgcgatcaggtggccaatgcagtgtttttgccggatctgctgatgcag
gataattccagtgtgaggttggatcagctcagtgcttacggtagacatgccgtcaaacag
gctgtggaggcactgcgtcaggtgcacgatatggtcggccggtcaatcacagatgtgatt
cgtgcggccatcgaggcgttgaatctcgatatcgataccgtgcttgccggtgctttgcga
gacccgcagcatcgtgtcaatccatcgctggcccgcatgcccatggactccattgtggat
ttggtggacacctatacgcaagagatcgctgttgaacagacgcccacattacgtggattc
atggcatgggtggatcatcttgccactgtggaagacgaggctgccaaactgcctagctct
ccggtggatgtggaattgatgaccgtgcaccaatccaagggattggaatgggatgcggtt
gccgtagtggggcttaatgccggaggatttcccagcaatcagggggatcacctcaaagtc
gtgctgggtgacaaccatcccggtggcactgaacaaggccaatggacagctcccgaatac
cacgagagcgcggattcgtggttgaccagccctgtggccgtaccggtgcccgtacgagcc
gatgccggaatcctgccgcgattccctcatgacgccgatgtgcatggcgatcccattgac
tcgttgcggaatctcgacgacgtggaactcatcgatgatgaggtgttcggctccatgcgc
gaattcggcgatggcgtggaagaggtggatccgcaaagctggtacctgacccagtccgaa
gaatatggccgcagactgcacgctgacgaacgccgtctggcatacgtggcgcttacccgc
gcccgtaacgacgccttgctgacctattgccgctataccggcgaatccagccgcgattgc
acgaacgtgccgaaggggtctcgcgccgcaagcccgtccaacttctggcttgaggtgcat
gacgcgttgcatggccacgaccatgcaatcgaagctcaggcatacgtggaaggtctggga
tccgaagtggcgctggtctcgccccagggtgatcccattgatcctcccgaaggcttcatc
gtgggggagaacgccgaacagtactgtgatgctgtggttggcgacgcatggcgtacgccg
ctggaacagacctccggccggaatgcattgccatggccggcgtcattgggcgaagacacc
gcggaacatctgacccgcggtctcgccttggtgcgtaatgccatcaacggaaagcgcaac
gcaaaagacgacggccacaacccggccggtccattgctgcaacgtgcgcaattgctggtc
gatgacgacgatctcatgaccggcacattggagggtgcggcactcgacagggccgtcaaa
gccaaagcccagcgcattctggctgcgggacgtcagaacgtcaccagcttgcaggcgcgg
gtgggtggtatgagccaacaggaggagcgctcctactggcgcagcgtgatacggcccatc
cctcgcgtgtcctcaccggctgccgaagcgggcacgcgcttccacgactgggccgagcgt
ttcatcaatgccggtaagccggatgaggccgcatcgtcggttgattccagcgccgccgaa
atcattaccaccggcaatggcgtatcccgcagcgacctattggccgacctgaacgccatc
gaccaacaatccgtaccggtctgcgaccggaacctcatgatatggcagcaccgtctggcc
tcgtcttcatgggcgcaacgcaccccggtatgggccgaacgctcaatcgtggtggatgtg
ccggaagtcggtatcgtgaacggcaaattggacgcggtgttcctcggcggaatcaatcca
gccgatacctccaaacggtacaccgtggtcgattggaaaaccggtcatcggcctaccaag
ccggatgatgtggagcgtaaactcgctcagctcgacatgtatcggttactgctcgccgcg
gtcgagggcgtggaattggacagtatcgacgccactctctactatgtcagtgagcctgat
gaaggcttgcgcgagcttcatgcccgcgcgaaaaccaaacaggaaatccttaccgagttg
agctccgggatccccgaacaatctgacaacgactga
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