Bifidobacterium breve 12L: B12L_0428
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Entry
B12L_0428 CDS
T03118
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bbre
Bifidobacterium breve 12L
Pathway
bbre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B12L_0428
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbre03019
]
B12L_0428
Messenger RNA biogenesis [BR:
bbre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
B12L_0428
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_6
DUF459
Motif
Other DBs
NCBI-ProteinID:
AHJ15216
LinkDB
All DBs
Position
562635..564491
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AA seq
618 aa
AA seq
DB search
MATEQKKTKTAKSSNSRRRGSARNSKANGSNSRTPSRKINVTQQATAPQQDAVLIAPPKY
RKGSMRITPLGGLGEIGRNMNVIEYNGHLLLIDCGVLFPEEEQPGVDLILPDFSYIKNRL
DKVDALVLTHGHEDHIGGVPYLLKLRPDIPLIGSKLTLAFVDAKCKEHHQNPTKVEVAGR
EKLKVGPFDLEFVNVTHSIPDALAVYVKTPAGSLIDTGDIKLDQLPLDHRITDLVEFGKI
GEKGVDLLMMDSTNAEVPGFVKPETSIGPALDQAFAQATRKIIVASFSSHVHRVQQVVDA
AHKYGRKVVFVGRSMVRNMSIAADLGYLHIPEGTVVDLKKANDIQDDKLVYMCTGSQGEP
MAALGRIADGNHRDIHINEFDTVILASSLIPGNEHGVYKVINKLVQLGAKVVNRDNAAVH
VSGHCNEGELLYMYNIVKPKCAMPIHGENRHLVANGLIAVKTGVDPQNVVLAEDGDVVDL
YHGKAAVVGSVPCGYVYVDGDSVGELTDDELEKRRILGTEGFVSAFVVVDTDNHEVVTGP
KIYLNAVAEDESEFDKVRHQIAEQLNDAMMQGTRDTYKLQQIMRRTLGGWVARQLHRKPM
IVPVVADIAQDVEIVDNN
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atggcaacagaacagaagaaaacaaagacagccaaaagctccaactctcgtcgtcgcggt
tccgcccgcaacagcaaggccaacggttccaacagccgcacgccgtctcgtaagatcaac
gtcacccagcaggccaccgctccccagcaggatgccgtgctgatcgccccgccgaagtac
cgcaagggctccatgcgcatcacgccgctcggcggcttgggcgaaatcggccgcaacatg
aacgtgatcgaatacaacggtcacctgctgcttatcgactgcggcgtgctcttccctgaa
gaggagcagccgggcgtggatctcatcctgcccgatttcagctacatcaagaaccgtctc
gacaaggtcgacgccctggtgctcacccacggccacgaggaccacatcggcggcgtgccc
tacctgctcaagctgcgcccggacatcccgctgatcggctccaagctgaccctcgccttc
gtggacgccaagtgcaaggaacaccaccagaaccccaccaaggttgaggttgccggccgt
gagaagctcaaggtgggccccttcgacctcgaattcgtcaacgtcacccactccatcccg
gacgccctggccgtctacgtcaagaccccggccggctccctgatcgacaccggcgacatc
aagctcgaccagctgccgctcgaccaccgcatcaccgacctcgtggaattcggcaaaatc
ggcgaaaaaggcgtggacctgctgatgatggactccaccaacgccgaggtgcccggcttc
gtcaagccggagacctccattggtccggctcttgaccaggcatttgcgcaggctacccgc
aagatcatcgtcgccagcttctcctcccatgtgcaccgcgtgcagcaggtggtggatgcc
gcccacaagtacggccgcaaggtcgtgtttgtcggccgttcgatggtgcgcaacatgtcc
atcgctgccgatcttggctatctgcacattcctgaaggcaccgttgtggacctcaagaag
gccaacgacattcaggatgacaagctcgtctacatgtgcaccggctcccaaggtgagccg
atggccgcccttggccgtatcgccgacggcaaccaccgtgacatccatatcaatgagttc
gacacggtgattctcgccagctccttgattccgggtaacgagcacggcgtctacaaggtc
atcaacaagctggtgcagctcggcgccaaggtcgtcaaccgcgacaatgccgccgtgcac
gtgtccggtcactgcaatgagggcgagctgctgtacatgtacaacatcgtcaagcccaag
tgcgccatgcctatccacggcgaaaaccgccatctggtggccaacggactgattgccgtc
aagaccggtgtcgacccgcagaacgtggtgctggccgaggacggcgacgtggtcgacctg
tatcacggcaaggccgcagtcgtcggctccgtgccgtgcggctacgtgtacgtcgatggc
gattcggttggcgagctgaccgatgacgaactcgagaagcgccgcatccttggtactgaa
ggcttcgtctccgcgttcgtggtggtcgataccgataaccacgaggtcgttaccggcccg
aagatctacctgaatgccgtggcagaggacgaaagcgagttcgacaaggtgcgtcaccag
attgccgaacagctgaacgacgcgatgatgcagggcactcgcgacacctacaagctgcag
cagattatgcgtcgtacactcggcggatgggttgcccgtcagcttcaccgtaagccgatg
atcgtgcctgtcgtggccgacatcgctcaagacgtcgaaatcgtagacaacaactga
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