Bifidobacterium breve 12L: B12L_0530
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Entry
B12L_0530 CDS
T03118
Name
(GenBank) Excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
bbre
Bifidobacterium breve 12L
Pathway
bbre03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bbre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B12L_0530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbre03400
]
B12L_0530
DNA repair and recombination proteins [BR:
bbre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
B12L_0530
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
B12L_0530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_DNA-bind
AAA_16
nSTAND1
AAA_21
BCA_ABC_TP_C
AAA_25
SMC_N
ATPase
AAA_29
DnaJ_CXXCXGXG
DUF463
Lar_restr_allev
MobB
RecA
T2SSE
Anti-TRAP
DUF4350
HypA
OrfB_Zn_ribbon
RNase_E_G_Thio
Motif
Other DBs
NCBI-ProteinID:
AHJ15311
LinkDB
All DBs
Position
680384..682888
Genome browser
AA seq
834 aa
AA seq
DB search
MSNDQRPQAIEVRGARVHNLKNIDIDIPLGELVGVAGVSGSGKSSLALGVLYAEGSRRYL
EALSTYTRRRLTQASRAQVDEVLHVPAALALHQRPTVPGIRSTFGTMTELLNSLRLLFSR
VASHVCPHCGARNESTLNVAAGLPITCAGCGKEFHAPGAESLAFNSAGACPTCSGTGIVR
EVNRAALVPDESKSIDDGAVLPWGSLMWDLMKQVCGAMGVRTNVPFSELTPEERDIVFNG
PAVKKHILYKPKKGDDFAELDFTYFNAVYTVENALAKAKDEKGLKRVARFLKEGPCADCG
GTRLSAAARAPHVRGLNLAEASAMTLEAAVDWVRGVPESLPADMRPMATNICESFLDVAR
RLLDLGLGYLALDRAGATLSTGERQRVQLARAVRNRTTGVLYVLDEPSIGLHPSNVDGLL
GVMRDLVADGNSVVVVDHDVRVLKAADHLIEMGPVAGAEGGHVIAQGTVDEVAANPSSRI
APFLADNVSARIRERVAEPQVFDLGHIRMTTSQLHTVKPLDVDIPRGRLVAVTGVSGSGK
TTMVLESLIPALKAQAAGEQLPEHVRELEAEGIHRANLIDATPIGANVRSTVATYADIHD
ELRRAFARCDAAKTCGWKAGDFSYNTGRLRCPTCDGTGSISLDVQFLPDVTIECPDCGGS
RYASEAGAIRRAVKGESHLSLSLPQLMAMSVDQALAVTHDLKKVHARLTTLHDLGLGYLT
LGEPTPALSGGEAQRLKLASEMGKAQSDAVFVFDEPTIGLHPLDVRVLLGVFDRLVASGA
TVVVIEHDLDVIANADWIIDMGPGGGESGGRIVATGTPEQVAANPSSITGRYLG
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atgagcaacgatcagcggccgcaggcgatcgaagtgcgcggggcgcgcgtgcataacctg
aagaacattgacatcgacattccgctgggcgaactggtgggcgtggccggcgtctccggt
tcgggcaagagctcgctggcgctcggcgtgctgtatgcggaaggttcgcggcgctacttg
gaggcgctgtccacgtacacgcgacgccgcctgacccaggccagtcgcgcccaagtggac
gaagtactgcacgtgccggccgcgctggccctgcaccagcggcccacggtgcctggcatc
cgttcgacgttcggcacgatgaccgaactgctcaacagtctgcggctcctgttctcccgc
gtcgcctcgcacgtgtgcccgcattgcggggcgcgcaacgagtcgacgctgaacgtggcg
gccggactgcccatcacctgtgctggctgtggcaaggaattccacgcgcccggagccgaa
tcgctcgctttcaactcggccggcgcctgcccgacctgctccggaaccggcattgtgcgc
gaagtgaaccgtgcggccctggtgccggatgagtcgaaaagtatcgacgacggtgcggtg
ctgccatggggctcgctcatgtgggaccttatgaagcaggtgtgcggcgcgatgggcgtg
cgcaccaacgtgccgttcagcgagctcacgcccgaagagcgtgacatcgtattcaacggg
ccggccgtcaaaaagcatattctttacaagccgaagaaaggcgacgatttcgccgaactc
gatttcacctacttcaacgccgtatacacggtggagaacgcgctcgccaaagccaaggac
gagaaaggtctgaagcgcgtggctcgatttctcaaggagggaccatgcgccgactgcgga
ggtacccgactgagcgccgcagcccgggccccgcatgtgcgcgggctgaacctggccgaa
gccagtgcgatgaccttggaagcggcggtggattgggtgcgcggcgtgccggaatctctg
cccgccgacatgcggccgatggccaccaacatctgcgaatcattcctggacgtggcccgc
cgactgttggatttgggcctcggctatctggcgcttgaccgcgccggtgccacgctttcg
accggtgaacgccagcgtgtgcagctcgcccgtgccgtgcgcaaccgcaccactggcgtg
ctgtatgtgcttgacgagccatccatcgggctgcacccctcgaacgtggacggactgctc
ggcgtgatgcgcgatctagtggcggacggcaattccgtggtggtcgtggaccatgacgtg
cgcgtgctcaaagccgccgaccatctcattgaaatgggaccggttgccggcgccgaaggc
gggcatgtgatcgcgcaaggcacggtagacgaagtggcggcgaatccaagtagtcgtatt
gcgccgttcttggccgataatgtgagcgcgcgcatccgtgagcgcgtggcggaaccgcag
gtgttcgaccttggccacatccgcatgacaaccagccagttgcatacggtcaagccgctg
gacgttgatattccgcgcggccggctcgtggcggtgacaggcgtctccggctccggtaaa
accacgatggtgctcgaatcgctgattcccgcgctcaaagcgcaggcggcgggggagcag
ttgccggaacatgtgcgtgaacttgaggccgagggcatccatcgtgcgaatctcatcgac
gccacgccgattggcgcaaacgtgcgctccaccgtggccacctatgccgatattcacgac
gagctgcgccgcgccttcgcccgatgcgatgcggccaagacgtgcggctggaaggccggc
gatttctcgtacaacactggacggctgcgttgccccacgtgcgacggcaccggttcgatc
tcactcgacgtgcagttcctgccggacgtgaccatcgaatgcccggactgcggcggttcc
cggtatgcgtctgaagccggcgcgattcggcgtgcggttaagggagaatctcacctttca
ctgagtctgccccaactcatggcaatgagcgtggatcaggcattggccgtgacccacgac
ctcaagaaggtccacgcacgtctgaccaccttgcatgatttgggtcttgggtatctgaca
ctcggcgaaccgacgccggcgctttcgggcggcgaagcccagcggttgaagctcgccagc
gaaatgggcaaagcccaatcggacgcggtattcgtgttcgatgagccgaccatcggtctc
cacccgctcgacgtgcgtgtgctgctgggcgtgttcgaccggcttgtggcgagcggcgca
acagtcgtggtcatcgaacatgaccttgacgtgatcgccaatgcggactggatcatcgac
atggggccgggcggcggcgaaagcggcggacgcatcgtcgccaccggaacgccggaacag
gtcgcggccaacccaagcagcattactgggcggtatttagggtaa
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