Bifidobacterium breve 12L: B12L_1667
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Entry
B12L_1667 CDS
T03118
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bbre
Bifidobacterium breve 12L
Pathway
bbre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B12L_1667
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbre03019
]
B12L_1667
03009 Ribosome biogenesis [BR:
bbre03009
]
B12L_1667
Enzymes [BR:
bbre01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
B12L_1667
Messenger RNA biogenesis [BR:
bbre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
B12L_1667
Ribosome biogenesis [BR:
bbre03009
]
Prokaryotic type
rRNA processing factors
B12L_1667
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
RD3
Motif
Other DBs
NCBI-ProteinID:
AHJ16391
LinkDB
All DBs
Position
complement(1990964..1994005)
Genome browser
AA seq
1013 aa
AA seq
DB search
MQRAARSIVPTENREGFVGDETDNSTVSNTESQASGASEPNAEASQPTRRRRGGRRVVRG
AGAAGASLELQVQEHAAPLFEAPALPDADASASAETTDNNASDDEKRPARRTRSRRSADN
ADYEDRPTRRRAVADDDDEPRPVRRRRAVSDDLEEDDERPIRRRRSVIDDLEDDDAPRSS
RRRTAVDDSDEDGDRPVRRRRSTTNDRDDRDDEPRSARRTRSRRSSEDAREENPDERVLD
VIDALPAGHESARRGKPMTSLLFQEPVLPDMRRDDRDDEEDDGEQRSRSSRRSRAREDEA
DYEERPSRSRRSNRSDHGDHDDRDDHDDRDDSRNNRRRNETQDDFDADDQSDSRRSRRSR
RLNAQERRAAAEVEQIEEDLELDDITYSPIAEEENDEESDSTRTRSRRRRRRGSRNESGA
SNNDSESSENNGDDSRRRRDDRDERDRDDDEEQTVTRRRRRRRGGKNAESGDEQDDQQLT
RRSRKQQYIDEITDVEGSTRLEAKKQRRRDNRRERSRQSQLMEQDFLARRENVDRLMVVR
EKEHHTQISVVEDNILVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIGQARNGVL
YAGEVNWDAARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVP
SGGMTGVSRKLSERERSRLKGIVSKIAPKDMGVIIRTAAEGASEEAIVKDLESLVRQWER
INAKREEFWHGKRPKLLQGEPDVAIRVVRDIFNDDFGKLIVEGDKVYDRIEEYLDTMAPD
LKDKLEKWDPAEHEGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTG
RFIGKGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVEC
LARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHDQPTVSADYDD
PYALRGGDPFVKTNKHGRGTAPAPEPAGSSADVKAKLAQIAAAAVAANNTEEE
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgtgccgcgaggagcattgtgcccactgagaaccgtgaaggtttcgtcggtgac
gaaaccgataactcaaccgtatccaataccgaatcacaggcttcgggagcttccgagccg
aacgccgaagcatcgcagccgactcgccgccgtcgcggtggccgtcgtgtagtgcgtggt
gccggtgctgccggcgcatcccttgagctgcaagtccaggaacacgccgccccgctgttt
gaggcacccgctttgcctgatgccgatgcgtccgcttccgccgaaactaccgacaataac
gcctccgatgacgagaagcgtccggcgcgccgcacccgtagccgccgctctgccgataat
gccgattatgaggaccgtccgactcggcgtcgtgctgtggctgatgacgatgatgagccg
cgcccggtgcgccgtcgtcgcgcggtgtccgatgatctcgaggaagacgatgagcgtccg
attcgccgtcgtcgctctgtgattgacgatctcgaagatgatgatgcgccgcgttcatct
cgccgccgtactgcggtcgacgactccgatgaggatggcgatcgtccggtgcgtcgccgt
cgttccactacgaatgaccgcgatgaccgcgatgacgagccccgctcggcccgtcgtact
cgcagccgccgttcttcggaagacgcgcgcgaagaaaaccccgatgagcgcgtgctggat
gtgattgatgcgctgcctgcagggcatgaatccgcccgtcgtggcaagccgatgacttcc
ctgctgttccaagagccggtgctcccggacatgcgacgtgatgatcgtgatgatgaggaa
gatgatggcgaacagcgttcccgctcttctcgtcgctcccgcgcccgtgaggatgaggcc
gattacgaggaacgcccgtctcgttcccgccggtcgaaccgcagcgatcacggcgatcat
gatgaccgcgatgatcacgatgaccgcgatgacagccgcaataatcgtcgccgtaatgag
actcaggatgatttcgacgctgatgaccagtccgattctcgccgttctcgccgttctcgc
cgcctgaacgcccaggagcgccgtgctgccgccgaagtcgagcagattgaggaagacctc
gagctggatgacattacgtactcgccgattgctgaagaggagaacgacgaagagtccgac
tccacccgcacccgttcccgccgtcgccgtcgccgtggctcccgcaacgagtccggtgct
tccaacaacgacagcgagtcctccgagaacaatggtgacgattcccgtcgccgtcgcgat
gatcgcgatgagcgcgaccgtgatgatgacgaggagcagaccgttacccgccgtcgtcgc
cgccgccgcggaggcaagaatgccgagagcggtgatgagcaggacgatcagcagctgact
cgccgctcccgcaagcagcagtacatcgatgagatcaccgatgtggaaggctccacccgt
cttgaggccaagaaacagcgacgccgtgacaatcgtcgtgagcgtagccgccagagccag
ctcatggagcaggatttcctcgcacgccgtgagaacgtcgatcgcctcatggtggtgcgc
gagaaggaacatcacacccagatttccgtggtggaagacaacattctggtcgagcattac
gtctccgacatccaggaagtgcagaccgtgggcaacatctacctcggccgtgtacagaac
gtgctgcccagcatggaagccgctttcgtggacatcggccaggcccgtaacggcgtgctc
tacgccggtgaggtcaactgggacgccgcgcgtctcgaaggccagccgcgccgcatcgag
ttggcgttcaagtccggcgacccggtgctcgtgcaggtcaccaaggatccgatcggacac
aagggagcccgcctgacttctcaggtcacgctcgccggccgcttcctggtgctcgtgccg
tccggcggcatgaccggcgtgagccgcaagctctccgaacgcgaacgtagccggctcaag
ggcatcgtctccaagatcgccccgaaggatatgggtgtcatcatccgtaccgcagccgag
ggcgcctccgaggaagccatcgtcaaggatcttgagtctttggttcgccagtgggagcgc
atcaacgccaagcgtgaggaattctggcatggcaagcgcccgaagctcctgcagggcgag
cccgatgtggctatccgtgtggtgcgcgacatcttcaacgatgacttcggcaagctcatc
gtcgaaggcgacaaggtctacgaccgtatcgaggagtatctcgacaccatggcccccgac
ttgaaggataagctggagaagtgggacccggccgagcatgagggcaaggacgtgttcgac
aagtggcagatcgactcccaactcagaaagggcatggagcgtcaggtctacctgccgtct
ggtgggtcgatcgtcatcgaccgcactgaagccatgaccaccattgatgtgaacaccggc
cgcttcatcggcaagggcaagtcccttgaggagacggtgacgcgttgcaatttggaggcc
tctgaggaaattgcacgtcagctgcgactgcgcgacatcggcggcatggtgatgattgac
tatgtggatatggtcatgcccgctaaccgtgacttggtgctgcgccgtctagtcgaatgc
ctggcgcgtgaccggaccaagcatcaggtggccgaggtcacctcgcttggtctggtgcag
atgactcgtaagcgcatcggtcagggcctggtcgaggcgttctccgaggaatgcccgact
tgcaagggtcgtggctttatcctgcacgatcagccgactgtttccgccgactacgatgac
ccgtacgcattgcgcggcggtgatccgttcgtcaagaccaacaagcatggtcgaggcact
gccccagctccggaaccggccggctccagcgctgatgtcaaggccaaactggcccagatt
gcagctgctgccgtggccgccaacaacaccgaggaggagtag
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