Blastococcus brunescens: U6N30_31115
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Entry
U6N30_31115 CDS
T09910
Name
(GenBank) DEAD/DEAH box helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bbrg
Blastococcus brunescens
Pathway
bbrg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbrg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U6N30_31115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbrg03019
]
U6N30_31115
03400 DNA repair and recombination proteins [BR:
bbrg03400
]
U6N30_31115
Enzymes [BR:
bbrg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
U6N30_31115
Messenger RNA biogenesis [BR:
bbrg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
U6N30_31115
DNA repair and recombination proteins [BR:
bbrg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
U6N30_31115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
HEM4
Motif
Other DBs
NCBI-ProteinID:
WRL63996
UniProt:
A0ABZ1B1E8
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All DBs
Position
4624413..4626071
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AA seq
552 aa
AA seq
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MTTAAPPSEIADEALAILRELTGRPDAVFREGQDAAVSALVERSQRALVVQRTGWGKSAV
YFVSTALLRRRGKGPTLLVSPLLALMRDQVTAAARAGIRAVEISSANMTEWDDIAARLAA
DDVDVLLVSPERLTNPRFREEQLPGLVARCGLVVVDEAHCVSDWGHDFRPDYRRIRDLLG
TLPAGTPVLATTATANERVVADVAEQLGSGGVEVTTVRGPLSRDSLRLGVLRLPSDRARL
AWLSAHLGDLPGSGIVYTLTVAAAEETAALLRGAGHEVRAYTGRLDDADRKDAEEALRNN
EVKALVATSALGMGFDKPDLGFVVHLGAPSSPVSYYQQVGRAGRAVEHADVLLLPGPEDL
AIWQWFATSSMPREDHAAAVLTAMADGKAWSVARLETVADVRRSRLELLLKVLAVDGAVE
RVQGGWRSTGQPWVYDADRYARVTRTREAEQRSMIAYARPVDEAMCRMAFLQEALDDPTA
APCGRCDVCAGPWYSADVPEAAAEAASAALDRPGWSWRPGRSGPPAPTGWVSTSRARSRP
LTRSRRAGRSPG
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccgctgcgccgccgtccgagatcgctgacgaggcgctcgccatcctccgcgag
ctgaccggtcgccccgacgccgtcttccgcgaggggcaggacgccgcggtgtcggcgctc
gtcgaacgctcccagcgggcgctggtcgtccagcgcaccggctggggcaagtcggctgtc
tacttcgtctccaccgcgctgctccgtcgccgcggcaagggtccgaccctgctcgtcagc
cctctgctggcgctgatgcgcgaccaggtgaccgccgccgcgcgtgcgggcatccgcgcc
gtggagatctccagcgccaacatgaccgagtgggacgacatcgccgctcgcctcgccgcc
gacgacgtcgacgtcctgctggtctcacccgagcggttgaccaacccgcgcttccgcgag
gagcagctcccggggctggtcgcccggtgtggcctggtcgtcgtcgacgaggcgcactgc
gtctccgactgggggcacgacttccgccccgactaccgccgcatccgcgatctgctgggc
acgctcccggccgggacgccggtgctcgcgaccaccgcgaccgcgaacgagcgcgtcgtc
gcggacgtcgccgagcagctgggctccggaggcgtggaggtgacgacggtcaggggcccg
ctctcccgtgactcgttgcggctcggcgtcctccggctcccctccgaccgtgcccgactg
gcgtggctgtccgcgcacctcggcgacctgccgggcagtggcatcgtctacacgctgacc
gtcgcggctgcggaggagaccgccgcgctgctgcgcggcgccggccacgaggtgcgggcg
tacaccggccggctcgacgacgccgaccgcaaggacgccgaggaggcgctgcgcaacaac
gaggtgaaggcgctggtggccacctcggcgctcggcatgggcttcgacaagcccgacctc
ggcttcgtcgtccacctcggtgcaccgtcgtcgccggtcagctactaccagcaggtgggc
cgcgccggccgcgccgtcgagcacgccgacgtcctgttgctccccggccccgaggacctg
gcgatctggcagtggttcgcgacctcgtcgatgccgcgggaggaccatgcggccgcggtg
ctgacggcgatggccgacggcaaggcctggtcggtggcccgtctggagacggtggccgac
gtccggcggtcccgcctcgagctgctgctcaaggtcctcgccgtcgacggcgcggtggag
cgggtccagggcgggtggcgctccaccgggcagccgtgggtctacgacgccgaccgctac
gcccgcgtcacgcgcacccgcgaggcggagcagcggtcgatgatcgcctacgccaggccg
gtggacgaggcgatgtgccggatggccttcctgcaggaggctctcgacgacccgacggcg
gcgccgtgcgggcgctgcgacgtgtgcgccggtccctggtactcggccgacgtccccgag
gccgcggcggaagcggcgtcagccgcgctcgaccggccggggtggagctggcgccccggg
cgcagtggcccaccggcgccgaccggctgggtgtcgacgtcaagggcaagatcgcggccg
ctgaccaggtcgagacgggccgggcggtcgcccggctga
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