Bifidobacterium breve JCM 7017: B7017_0578
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Entry
B7017_0578 CDS
T03120
Name
(GenBank) Excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
bbrj
Bifidobacterium breve JCM 7017
Pathway
bbrj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bbrj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B7017_0578
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbrj03400
]
B7017_0578
DNA repair and recombination proteins [BR:
bbrj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
B7017_0578
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
B7017_0578
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_DNA-bind
AAA_16
nSTAND1
AAA_25
AAA_21
BCA_ABC_TP_C
ATPase
AAA_29
DnaJ_CXXCXGXG
RecA
MobB
Lar_restr_allev
Anti-TRAP
DUF463
DUF4350
OrfB_Zn_ribbon
T2SSE
RNase_E_G_Thio
Motif
Other DBs
NCBI-ProteinID:
AHJ17105
LinkDB
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Position
724500..727013
Genome browser
AA seq
837 aa
AA seq
DB search
MPSMSNDQRPQAIEVRGARVHNLKNIDIDIPLGELVGVAGVSGSGKSSLALGVLYAEGSR
RYLEALSTYTRRRLTQASRAQVDEVLHVPAALALHQRPTVPGIRSTFGTMTELLNSLRLL
FSRVASHVCPHCGARNESTLNVAAGLPITCAGCGKEFHAPGAESLAFNSAGACPTCSGTG
IVREVNRAALVPDESKSIDDGAVLPWGSLMWDLMKQVCGAMGVRTNVPFSELTPEERDIV
FNGPAVKKHILYKPKKGDDFAELDFTYFNAVYTVENALAKAKDEKGLKRVARFLKEGPCA
DCGGTRLSAAARAPHVRGLNLAEASAMTLDAAVDWVRGVPESLPADMRPMATNICESFLD
VARRLLDLGLGYLALDRAGATLSTGERQRVQLARAVRNRTTGVLYVLDEPSIGLHPSNVD
GLLGVMRDLVADGNSVVVVDHDVRVLKAAGHLIEMGPVAGAEGGHVIAQGTVDEVAANPS
SRIAPFLADNVSARIRERVAEPQVFDLGRIRMTTSQLHTVKPLDVDIPRGRLVAVTGVSG
SGKTTMVLESLIPALKAQAAGELLPEHVRELETAGISRANLIDATPIGANVRSTVATYAD
IHDELRRAFARCDAAKTGGWKAGDFSYNTGRLRCPTCDGTGSISLDVQFLPDVTIECPDC
GGSRYASEAGAIRRAVKGESHLSLSLPQLMAMSVDQALAVTHDLKKVHARLTTLHDLGLG
YLTLGEPTPALSGGEAQRLKLASEMGKAQSDAVFVFDEPTIGLHPLDVRVLLGVFDRLVA
SGATVVVIEHDLDVIANADWIIDMGPGGGESGGRIVATGTPEQVAANPSSITGRYLG
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
gtgccgagcatgagcaacgatcagcggccgcaggcgatcgaagtgcgcggggcgcgcgtg
cataacctgaagaacatcgacatcgacattccgctgggcgaattggtgggcgtggccggc
gtctccggttcgggcaagagctcgctggcgctcggcgtgctgtatgcggaaggttcgcgg
cgctacttggaggcgctgtccacgtacacgcgacgccgcctgacccaggccagtcgcgca
caggtggacgaagtactgcacgtgccggccgcgctggccctgcaccagcggcccacggtg
cctggcatccgttcgacgttcggcacgatgaccgaactgctcaacagtctgcggctcctg
ttctcccgcgtcgcctcgcacgtgtgcccgcattgcggggcgcgcaacgagtcgacgctg
aacgtggcggccggactgcccatcacctgtgctggctgtggcaaggaattccacgcgccc
ggagccgaatcgctcgctttcaactcggccggcgcctgcccgacctgctccggaaccggc
attgtgcgcgaagtgaaccgtgcggccctggtgccggatgagtcgaaaagtatcgacgac
ggtgcggtgctgccatggggctcgctcatgtgggaccttatgaagcaggtgtgcggcgcg
atgggcgtgcgcaccaacgtgccgttcagcgagctcacgcccgaagagcgtgacatcgta
ttcaacgggccggccgtcaaaaagcatattctttacaagccgaagaaaggcgacgatttc
gccgaactcgatttcacctacttcaacgccgtatacacggtggagaacgcgctcgccaaa
gccaaggacgagaaaggcctgaagcgcgtggctcgatttctcaaggagggaccatgcgcc
gactgcggaggtacccgactgagcgccgcagcccgggccccgcatgtgcgcgggctgaac
ctggccgaagccagcgcgatgaccttggatgcggcggtggattgggtgcgcggcgtgccg
gaatctctgcccgccgacatgcggccaatggccaccaacatctgcgagtcattcctggac
gtggcccgccgactgttggatttgggcctcggctatctggcgcttgaccgcgccggtgcc
acgctttcgaccggtgaacgccagcgtgtgcagctcgcccgtgccgtgcgcaaccgcacc
actggcgtgctgtatgtgcttgacgagccatccatcgggctgcacccctcgaatgtggac
ggactgctcggcgtgatgcgcgatctagtggcggacggcaattccgtggtggtcgtggac
catgacgtgcgcgtgctcaaagccgccggccatctcattgaaatgggaccggttgccggc
gccgaaggcgggcatgtgatcgcgcaaggcacggtggacgaagtggcggcgaatccaagt
agtcgtattgcgccgttcttggccgataatgtgagcgcgcgcatccgtgagcgcgtggcg
gaaccgcaggtgttcgaccttggccgtatccgcatgacaaccagccagttgcatacggtc
aagccgctggacgttgatattccgcgcggccggctcgtggcggtgacaggcgtctccggc
tccggtaaaaccacgatggtgctcgaatcgctgattcccgcactcaaagcgcaggcggcg
ggggagctgttgccggaacacgtgcgcgagcttgagaccgcgggcatcagtcgcgcgaat
ctcatcgacgccacgccgattggcgcaaacgtgcgctccaccgtggccacctatgccgat
attcacgacgaactgcgccgcgccttcgcccgatgcgatgcggccaagacgggcggctgg
aaggccggcgatttctcgtacaacactggacggctgcgttgccccacgtgcgacggcacc
ggttcgatctcactcgacgtgcagttcctgccggacgtgaccatcgaatgcccggactgc
ggcggttcccggtatgcgtctgaagccggcgcgattcggcgtgcggttaagggagaatct
cacctttcactgagtctgccccaactcatggcaatgagcgtggatcaggcattggccgtg
acccacgacctcaagaaggtccacgcacgtctgaccaccttgcatgatttgggtcttggg
tatctgacactcggcgaaccgacgccggcgctttcgggcggcgaagcccagcggttgaag
ctcgccagcgaaatgggcaaagcccaatcggacgcggtattcgtgttcgatgagccgacc
atcggtctccacccgctcgacgtgcgtgtgctgctgggcgtgttcgaccggcttgtggcg
agcggcgcaacagtcgtggtcatcgaacatgaccttgacgtgatcgccaatgcggactgg
atcatcgacatgggtccgggcggcggcgaaagcggcggacgcatcgtcgccaccggaacg
ccggaacaggtcgcggccaacccaagcagcattactgggcggtatttagggtaa
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