Bifidobacterium breve JCM 7017: B7017_0613
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Entry
B7017_0613 CDS
T03120
Name
(GenBank) DNA-helicase-II-like protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
bbrj
Bifidobacterium breve JCM 7017
Pathway
bbrj03420
Nucleotide excision repair
bbrj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bbrj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B7017_0613
03430 Mismatch repair
B7017_0613
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbrj03400
]
B7017_0613
Enzymes [BR:
bbrj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B7017_0613
DNA repair and recombination proteins [BR:
bbrj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
B7017_0613
MMR (mismatch excision repair)
Other MMR factors
B7017_0613
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_12
Motif
Other DBs
NCBI-ProteinID:
AHJ17136
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Position
764126..765673
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AA seq
515 aa
AA seq
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MEQAQQILEGLDEQQRRAATTLNGPVRIIAGAGAGKTRTVTRRIAYACVTGAWKPERALA
VTFSVKAAAEMRARLEQLGLQGGTSGVTAATFHSAALRQLNSVWADVCEAPFPHLIENQR
DTVSRAITRATAVRDIDALTVRDVLAEINWAKISLVPIDDYARISVEANRQPPAGFDAAR
FAAIYDAYEQEKTSQGEIDFDDILLLVCHIMDDFPEAAAQIRSSIGWLTVDEYQDVSPLQ
HRLLNLWLGGGGPNGKAAMNRNVCVVGDPAQTIYSFAGASSWHLLQFADEFGPLSADINL
NTDYRSTPEVVGLANRVLAAAPNREDYLKLVSAREKGVRISRTAYDTDDLEAQGVAARIA
RLVAQGAKPSDCAILTRINAQQPVFGAALRAARLKFRVRKDSGWQSSSLADDATTRKALL
EAMGLDATGSQQSTDPGVMISTIHAAKGLEFKHVFLVGCSEGLLPYGSPEPGETLEEERR
LMYVGVTRAEDSLHLSYARTKDGYGAQQRRPSRFL
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atggaacaagcgcagcagattcttgaagggctcgatgagcagcagcgccgggcggcgact
acgctgaatggcccggtgcgcatcatcgccggtgcaggcgcaggcaagacccgtaccgtt
acgcgacgcatcgcctatgcctgcgtgacgggagcatggaagcccgagcgggcgcttgcc
gttacgttttcggtgaaagccgctgccgaaatgcgtgctcgacttgagcagctggggctg
caaggcggtacatccggtgttaccgccgctacttttcactctgcggcattgcgccagctc
aacagtgtgtgggccgacgtctgtgaagcgccattcccgcatctcatcgaaaatcagcgt
gacaccgtatctcgtgccatcactcgtgctaccgctgtacgagatattgatgcactgacc
gtgcgcgatgtactggctgaaatcaattgggccaaaatttctctggtacccatcgatgat
tacgcgcgtatcagcgtagaggccaatcgtcagccgcccgcagggttcgatgccgctcga
ttcgccgctatctatgatgcgtatgagcaagagaaaacatcgcaaggagaaatcgatttt
gacgacatcctgctgctggtatgccacatcatggatgattttcccgaagcggcggcgcag
attcgttcctccatcggctggctcaccgttgatgagtatcaggatgtttctccgctgcag
catcgtttgctgaacttatggcttgggggaggcgggccgaatggcaaggctgctatgaac
cgcaatgtatgtgtggtcggcgaccctgcacagaccatctactcgttcgcgggtgcatcc
agctggcatctgttgcagttcgccgatgagttcggccctctgtctgcagacatcaacctc
aacaccgactaccgttcgactcctgaagtggtgggtctcgccaatcgggtgcttgccgcg
gcccccaatcgtgaggattatttgaagctggtttccgccagggagaagggggtacgcatc
agccgaacggcctatgacaccgatgacctggaagcacaaggtgtggcggctcgcatcgca
cgacttgttgcgcagggtgcgaagccctccgattgcgcgattctgacgcgcatcaacgcg
cagcagccggttttcggtgcggcattgcgcgcggcaaggctgaaattccgcgtgcgtaag
gattccggatggcagtcttcgtcgctcgcggatgatgccacgacacgcaaggccctgttg
gaagccatgggattggacgccacaggcagccagcagagcaccgaccccggcgtcatgatt
tccaccatccatgcggccaaaggtctggaattcaaacacgtctttctggtcggctgctcc
gaagggctattgccgtacgggtcaccggaaccgggggagacgttggaagaggagcgacgg
cttatgtacgtgggcgtcacacgagccgaggactcgctgcatctgtcatatgcgcggacc
aaggatgggtatggggcgcagcagcgccgcccttcccgcttcttgtga
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