Bifidobacterium breve JCM 7017: B7017_1247
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Entry
B7017_1247 CDS
T03120
Name
(GenBank) ATP-dependent helicase hrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
bbrj
Bifidobacterium breve JCM 7017
Brite
KEGG Orthology (KO) [BR:
bbrj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbrj03019
]
B7017_1247
Enzymes [BR:
bbrj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
B7017_1247
Messenger RNA biogenesis [BR:
bbrj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
B7017_1247
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
DEAD
Helicase_C
AAA_19
AAA_22
HA2_C
SLFN-g3_helicase
T2SSE
nSTAND_NTPase5
nSTAND3
AAA_30
NACHT
ResIII
Zeta_toxin
DUF8152
AAA_16
SRP54
Cas3-like_C_2
AAA_11
AAA_23
Motif
Other DBs
NCBI-ProteinID:
AHJ17738
LinkDB
All DBs
Position
1483373..1487509
Genome browser
AA seq
1378 aa
AA seq
DB search
MKYEYPAELPVSAARDEIADAVRRSQVVIVSGQTGSGKTTQLPKILLELGRGTHGKQIVH
TQPRRIAARTVAERIASEMGVRLGDEVGYQVRFTDESSPNTRLRVVTDGILLAQIQRDPK
LSQYDTIIIDEAHERSLNIDFLLGYLTALLPQRRDLKLIITSATIDSVKFQEHFAHALHE
KVPVIEVSGRTFPVQVVYEPLGTAPALMREVPGFATGARPGDADYDELASAIAESDADHS
RRRGNADYADDGITDMPTAVARACAELVIHSSHERGPRDILVFASGERDIHEFEAALRHH
YGPRADDMHRPDAIEIMPLFARLSAADQHKVFESHTHQRIVIATNVAETSLTVPGIRYVV
DPGTARISRYSKTAKVQRLPIEPISQASADQRSGRCGRVADGIAIRLYSREDYETRPRFT
EPEILRTSLGAVVLHMLSVGVARTAEDVTNFGFIDPPDMKAVSDGFNELTELKAIGRKRG
EVTLTHTGRQLARIPIDVRLGRMVIEAAKAGSPNLLASVLVVVAFLSLQDPRERPDDKRE
EADRIHNRYADETSDFLTALNIWDRVFQADGDPSNNALRRICRTEYFSWLRMRQWKDLVS
QLRQMCKELKFKVGDPLPSSRPGLEIRQLPLNQQAAHSLCCSWDTDGIHKSMLAGLLSMM
GMQVIREPKASDFAGLSGAARARAMKRAQKMSKNDYQGARGTRFALFPASAVAKKTPSWV
MSTELVETSRLWARYSAAIDPAWAEPLAGQLTRTTYAEPHWSGSRGSAVATARVLLYGLP
IVRDRAVQWGRINPLEARDFLIRQGLVEGDIQQRFSYDEFVGRNRDILEDAADDASRTRQ
LADTVSDEDLFDFYNAVIPNDVTCVADLAKWWKIDHDKQPDLLDFDPAKVERLASSDSVS
LDDYPDHWHTTGSDGQPIDLRLSYVYDPTDPADGVTVHVPLKALSRITPDQFTWNVPGLL
DELILAMIKALPKQLRVQFVPAPDAARSIRDWINEHYPDLPGSGSQQKPNLPPVDEEGTT
VGWPDLAHVFTKAAIATVGAQIHPEVLGPELVERLSPYLRVTFSVEQQLPAGKHPRGRRH
ARGPVKVLGTAKDLKALQREFAAQAEASARQMVKKQAEQAGEQGKLVQQANLLHKAGATT
ESRATMLWRGALDALRLPGERISSRWLGTEALMLAAAPYKSTKELVEDLQLATVKRLLPN
VDKLADDEALANAVLDIREVYEDTVYQVAHDVIGIMKSYADVDKATSGKADLPMLSVLQS
IRDHIATLVYPGFIGRTPPDVLKSLSRYLKADVSRLNKAKTDKNRDVKWAWQADEAKQLV
DKALARAKAEPAGPKHEALMQQAEQARWMLEEFYVSLWAQELGTKGPASLNRIKKALS
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atgaaatatgagtatcctgccgaacttcccgtatccgccgcacgtgatgagatagccgac
gctgtccgtcgttcacaagtcgtcatcgtttccggtcagaccggttccggcaaaaccacg
cagctgccgaagattctgttggaactcggccggggcacacacggcaagcagatcgtgcat
acccagccccgccgtatcgccgcacgcacggtggccgaacgcatcgcctccgaaatgggc
gtacgtctgggcgatgaagtcggctatcaggtgcgcttcaccgacgaaagctccccgaat
acgcgtctgcgcgtggtgaccgacggtattctgctcgcccagattcaacgcgatccgaag
ctcagccagtatgacacgatcatcatcgacgaggcccacgagcgcagcctgaacatcgac
tttctgctcggatatctaacggccctgctcccccagcgtcgcgacctgaagctcatcatc
acctccgcaaccatcgattcggtgaagttccaagaacatttcgcgcacgcattgcacgag
aaagtaccagtgatcgaggtgtccggccgcaccttccctgtgcaggtggtgtacgaaccg
ctcggcaccgcacccgcactgatgcgtgaggtgccgggctttgcgaccggcgcccgcccc
ggagacgccgactatgacgagctggcgagcgccatcgccgaatccgatgccgatcattcc
cgcagacgcggcaatgccgattacgccgacgacggcatcaccgacatgcccacagcggtg
gcccgagcctgtgccgagctggtcatccattcctcccatgagcgcggcccgcgtgacatt
ctggtcttcgcttccggcgagcgcgacattcacgagttcgaggcagccctgcgtcaccat
tacggcccgcgagccgatgacatgcaccgccccgacgccattgagatcatgccgttgttc
gcgcgcctgtcggccgccgaccagcacaaggtgttcgagtctcacacccatcagcgcatc
gtcatcgccaccaacgtggccgagacctcgctgaccgtgcccggtatccgttatgtggtg
gatcccggcaccgcgcgcatctcccgttattcgaagaccgctaaggtgcagcgtctgccc
atcgagccgatcagccaggccagcgccgatcagcggtccggccgatgcggacgtgtggcc
gacggcattgccatccggttgtattcgcgtgaggattacgagacccgtccccgtttcacc
gagccggagatcctgcgaacctcgctaggcgcggtggtgctgcacatgctctccgtgggc
gtggcccgtacggcggaagacgtcacgaacttcggtttcatcgacccaccggacatgaag
gctgtgtccgacggattcaacgagctgaccgagctgaaggccataggccgcaagcgtggc
gaggtgacgctcacccataccggtcgtcagctggcgcgtattcccatcgacgtgcgtctg
ggccgcatggtcatcgaagcggccaaggccggttcaccgaatcttctggcttcggtgctc
gtggtggtggcgttcctcagcttgcaggacccccgcgagcgcccggatgacaagcgtgag
gaagccgaccgcattcataaccggtatgcggatgaaaccagtgattttcttacggcgttg
aatatctgggatcgcgtattccaggcggatggcgatccgagcaacaatgcgttgcgccgt
atctgcagaaccgaatatttcagctggctcaggatgcgccagtggaaggatctggtctct
cagctcaggcagatgtgcaaggagctgaagttcaaggtcggcgacccgttgccgtcttcc
cgccccggtttggagattcgtcagctgccattgaatcagcaggccgcgcattcgctgtgc
tgttcgtgggatacggacggcattcataaatcgatgcttgccggcttgctgtccatgatg
ggcatgcaagtgatccgagagcccaaggcttccgactttgcgggactcagtggagcggct
cgtgcccgcgcgatgaaacgcgcccagaagatgtcgaagaatgactatcaaggtgcgcgc
ggcactcgtttcgccttgttcccggcctccgccgtagccaagaagaccccttcatgggtg
atgagcaccgaactggtggagacctctcgtctgtgggcccggtattcggccgccattgac
ccggcatgggccgaaccgctggccggccagctaacccgcaccacgtatgcagaaccgcat
tggtccggctcgcgcggctccgccgtggccaccgcacgcgtcttgctctatggtctgccg
attgtgcgggatcgtgccgtgcagtgggggcgcatcaatccgcttgaggcccgtgatttc
ctgattcgtcaaggcttggtggaaggtgacattcagcagcgcttcagctacgacgaattc
gtgggcaggaatcgcgacattcttgaggatgccgccgatgatgccagccgcacccgtcag
ctggcggacaccgtgtccgacgaggatctgttcgatttttataatgccgtcattcccaat
gatgtgacctgtgtggccgatttggcgaaatggtggaagatcgaccacgataagcagccg
gatttgctggatttcgacccggccaaggtggaacgcctggcatccagcgattcggtcagt
ttggatgattaccccgaccattggcataccacgggttccgatggccagcctatcgacctg
cgcctgagctacgtgtacgacccaaccgacccggccgatggcgtcaccgtgcatgtgccg
ctcaaggcactctcgcgcattacgcccgaccagttcacatggaatgtgccgggtttgctg
gatgagctgattctggcgatgattaaggcactgcccaagcagctgcgcgtccagttcgta
ccggctccggatgccgcacgctcgattcgcgattggattaacgaacattaccccgatttg
ccgggttccggctcgcagcagaaaccgaatctgccaccggtggatgaggaaggcaccact
gttggctggcccgatctggcgcacgtgttcaccaaggccgccatcgctaccgtgggagcg
cagattcatcctgaggtgttgggaccggaattggtcgagcgtctgtccccgtatttgcgg
gttacgttctcagtggagcagcagttgccggccggcaaacatccgcgtggccgccgtcac
gcacgcgggccggttaaagtgctgggcaccgccaaagatctgaaggcattgcaacgcgaa
ttcgccgcgcaggcggaggcttcggcccgtcagatggtcaagaaacaggccgaacaggcc
ggcgagcaaggcaagctggtgcaacaggcgaatctgctgcataaggcgggtgccactacc
gagtcgagggccacgatgctatggcgtggcgcattggatgcgttgcgcttgccgggcgaa
cgcatttcgtctcgttggctgggcaccgaagcgttgatgctggctgccgccccctacaag
tccaccaaggaattggttgaggatttgcagctggccacggtcaagcgtctgctgccgaac
gttgacaagctcgcggatgatgaagctctggccaacgcagtgctcgacatacgcgaagtg
tatgaggataccgtgtaccaggtggcgcatgatgtcatcggcatcatgaagtcttatgcc
gacgtggataaggccacttccggcaaggccgatctgcccatgctttcggtgttgcagtct
atccgtgaccatatcgccacgcttgtctacccaggttttatcggccgcactcccccggat
gtgctgaaatcattgagccgttatctgaaggcggatgtgagtcgtctgaacaaggcgaaa
accgataagaaccgtgacgtcaagtgggcatggcaggccgacgaggccaagcaattggtc
gataaagcattggcacgggcaaaagccgaaccggccggcccgaagcatgaagcactgatg
cagcaggccgagcaggcgcgttggatgcttgaagaattctatgtgtctctctgggctcaa
gaactcggtaccaaggggccggcatcgctcaaccgcatcaagaaagcgctgtcctag
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