Bifidobacterium breve NCFB 2258: B2258_0693
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Entry
B2258_0693 CDS
T03122
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bbrn
Bifidobacterium breve NCFB 2258
Pathway
bbrn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bbrn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B2258_0693
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbrn03400
]
B2258_0693
Enzymes [BR:
bbrn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B2258_0693
DNA repair and recombination proteins [BR:
bbrn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
B2258_0693
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
RecG_dom3_C
CBS
AAA_22
AroM
Motif
Other DBs
NCBI-ProteinID:
AHJ20905
LinkDB
All DBs
Position
853339..856929
Genome browser
AA seq
1196 aa
AA seq
DB search
MAVDAKTAADTGHNAHPDLINGSLVGVLSKLEQDKVFHQLAVGDIEVSDDVDNSILAGVP
EGLRPALAAAIAQGVNGGAGKPVVLVVASGREAEETVGSLRSWYDGDPNDIAQLEAWETL
PHERLSPRADTVASRMAVFRRLKHPSDANPMFGPIRILVMPIRSLIQPVVQGLGDVEPLV
FTVGEDLPLDEAAKRLIENAYTRVELVMDRGEFAVRGGILDVFPPTAPHPVRIEFFGDEI
DTIKEFHASDQRTYGEGLKTIWATACRELQLTDAVRTRAKALIGSIPNAEDMLESIANAI
PVEGMESLMPALVDHLEPVGSMLPKHAVVLLSDPEKLRRSAEDLAKTANEFLAASWHVAA
SGHGAGAPISFDEASFLDYAETISSLEYSEHPVIRLTSFGVDTTLAGHVQLDAQNPAEFR
GDEAKASQGIDGLLDAGFHVTITAAAAGTLARLKRALNTTGITTFDTIRSQAIDGFVDNA
AKIALLTERDLTGRSSAVAVAKTPKRRRKAIDLVELKKGDYVVHEQHGIGRFIEMRQRTI
GTGANKTTREYLVIEYAPSKRGAPADKLFIPTDQLDQVSKYIGAEAPKLNKLGGSDWAAT
KAKARKHVHEIADDLIKLYSARQRAKGFAFSPDTPWQKELEDAFPYQETADQLTTIDEVK
SDMEKPVPMDRLICGDVGFGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHQETFTDRF
EGFPVNVAAMSRFQTTKEINATIEGLENGMVDVVIGTHKLLNPKIKFKDLGLVIIDEEQR
FGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPVLTYVGAY
EDAQVTAAVRRELLRGGQVFYVHNRVQDISSIADKIHTLVPEARVGIAHGKMGEKQLDQI
IRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLHQLRGRVGRGRERAYAY
FLYDPSKPMTEQSHDRLATIAQNTALGSGFDVAMKDLELRGTGNLLGDEQSGHIEGVGFD
LYVRMVSEAVEKYKEPDEDVEPVSVSIDLPIEASIPIDYIDSDKLRLEAYRKLASARNEA
DLKDLKEELTDRYGKPPVEFETLFDVARLKFKARKLGVSEILAQSNRVRIGRIDPPESIQ
MRMTRIYKGTQYRPVTHQLIVPTPFTGSLGQGPMSSDQVVLWTNQLLDDLAWRPQR
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atggccgttgatgcgaagacggctgctgacacaggccacaacgcccatccggatctgatt
aacggctcgctcgtgggcgtcctgtccaagctcgagcaggacaaggtttttcatcaactg
gcggttggcgacatcgaagtgtcggatgatgtcgacaattccattttggccggtgttccc
gaaggattgcgtccggcattggccgccgcaatcgcccaaggcgtgaacggtggggcaggc
aagccggtcgtgctggttgtggcctccggccgtgaagccgaggaaaccgtgggatcgctg
cgctcctggtatgacggcgacccgaacgatatcgcccagcttgaggcgtgggaaaccctg
ccgcacgaacgattgagcccgcgcgcggacactgtggccagccgtatggccgtgttccgc
agactgaagcacccgagtgacgccaatccgatgttcgggccgattcgcatccttgtcatg
ccgattcgctcgttgattcagccggtggtccaaggccttggcgacgtcgaaccactcgta
ttcacggtaggggaggatctaccgcttgacgaggcagccaaacgactcatcgaaaacgcc
tacacgcgcgtggaactggtcatggatcgcggcgaattcgccgtgcgtggtggcattctc
gacgtgttcccacctaccgcgccgcacccggtgcgtatcgaattcttcggtgacgaaatc
gacactatcaaggaattccacgcttccgaccagcgcacctatggcgagggtctcaaaacc
atctgggccaccgcttgccgcgaactgcaattgactgatgccgtgcgcacccgtgccaag
gccctgatcggttcgattcccaacgccgaagacatgctcgagtccatcgccaacgccatt
ccggtcgaaggtatggaatctctgatgcccgcgcttgtggatcacttggaaccggtgggc
tccatgctgcccaagcatgctgtggtgctgcttagcgaccctgaaaaactacgccgttcc
gctgaagatctggccaaaaccgccaacgagttcctggccgccagctggcatgtggccgca
tccggccacggcgccggcgcgcccatcagcttcgacgaagccagtttccttgactatgcg
gaaaccatcagttcgctcgagtattccgagcacccggtgattcgcctgacgagtttcggt
gtagacaccacgctggccggccatgtgcagctcgacgcgcaaaacccagccgaattccgc
ggcgatgaagccaaggcctcacaaggaatcgacggcctgttggatgctggcttccacgtc
accattaccgctgctgccgccggtaccttggctcgtctgaagcgtgcgctcaacaccacc
ggcatcaccacgttcgataccatccggtctcaggctatcgatggattcgtggacaatgcc
gccaaaatcgccctgctcaccgaacgcgacctgaccggtcgaagctctgcggttgctgtg
gccaaaacgccgaaacgccggcgcaaggccatcgacttagtggaactcaaaaaaggcgat
tacgtggtgcatgagcagcacggcatcggccggttcatcgaaatgcgccagcgcaccatc
ggcaccggcgccaacaaaaccacccgcgaatacctggtcatcgaatacgcgccttccaag
cgcggtgcaccggcggacaaactgttcatccccaccgaccagctcgaccaggtcagcaaa
tacatcggtgccgaagcccccaagctcaacaaactcggcggctccgactgggcggccacc
aaggccaaggcccgcaagcacgtccatgagatcgccgacgacctaatcaagctgtactcc
gcccgccagcgcgccaaaggctttgcattcagcccagacaccccgtggcagaaagaactg
gaagacgccttcccctatcaggaaaccgccgaccagctcaccactattgacgaagtcaag
tccgacatggaaaagcccgtgccaatggaccgtcttatctgcggtgatgtgggcttcggc
aaaaccgaaatcgccgtacgtgccgcattcaaagccgtacaggacggcaagcaggtggcg
gtgctcgtgcccaccactttgctcgttcaacagcatcaggaaaccttcaccgaccgcttt
gaaggattcccggtgaatgtggccgccatgagccgcttccaaaccaccaaggagatcaac
gcgaccatcgaaggcctggaaaacggcatggtggacgtggtcatcggcacacacaaactg
ctgaacccgaaaatcaagttcaaggatttgggactcgtcatcatcgacgaggagcagcgt
ttcggcgtggaacacaaggaaacgctgaaagccctgcgcaccaacgtggacgtgctgtcc
ctgtccgccacgcctattccgcgtacgttggaaatggccgtgaccggcattcgtgagatg
tccacgctcgccacaccgccagaagaccgtctgccggtgctgacctatgtgggtgcctat
gaggacgcgcaggtcaccgcggccgtgcgccgggaactgctgcgcggcggccaggtgttc
tatgtgcacaaccgcgtgcaggacatctcgtccatcgctgacaagattcacacgctggtg
cccgaggcgcgcgtcggcatcgcccacggcaagatgggggagaagcagctcgaccagatc
atccgcgacttctggcatcgcgacatcgatgtgctcgtatgcaccacgatcatcgaaacc
ggtcttgatatctccaatgcgaacacgctgatcgtggaccatgccgaccgtttcggtctg
agccagcttcatcagttgcgtggccgcgttggtcgtggccgcgagcgtgcgtacgcctac
ttcctgtatgacccgtccaagccgatgaccgagcagtcgcacgaccgactcgccaccatt
gcgcagaacacggcgctcggctccggcttcgacgtggccatgaaggatctggaactacgc
ggcaccggcaacctgctgggtgacgagcagtccggccatatcgagggcgtcggcttcgac
ctgtatgtgcgcatggtctccgaggctgttgaaaaatacaaggaacccgatgaggacgtc
gagccggtgtccgtgtccatcgatctgcctatcgaggcgtcgattccgattgactacatc
gattccgacaagctgcgtttggaggcataccgcaagctcgcttccgcacgcaatgaagcc
gacctcaaggatttgaaagaagaactcaccgaccgttacggcaagcctccggtcgaattc
gaaaccctcttcgacgtggctcgcttgaagttcaaggcgcgcaagctcggcgtttcggag
attctggcgcaatccaaccgcgtgcgtatcggacgcattgacccgcccgaatccattcag
atgcgcatgacgagaatctacaagggcacccaataccgcccggtcactcaccagctcatc
gtccccaccccgttcaccggctccctgggccaaggtcccatgagttccgatcaagtagtt
ctttggaccaatcagctcctcgatgacttggcatggaggccacaacgatga
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