Bifidobacterium breve NCFB 2258: B2258_0761
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Entry
B2258_0761 CDS
T03122
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
bbrn
Bifidobacterium breve NCFB 2258
Brite
KEGG Orthology (KO) [BR:
bbrn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bbrn03016
]
B2258_0761
Enzymes [BR:
bbrn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
B2258_0761
Transfer RNA biogenesis [BR:
bbrn03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
B2258_0761
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Motif
Other DBs
NCBI-ProteinID:
AHJ20971
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All DBs
Position
936705..938006
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AA seq
433 aa
AA seq
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MSDVHDTEPRLLKEPRGGVPDVTSTIEGYHHVCEALADASGSLAADAERASGFRYGHEDW
LIQCKREGAGIALLDPIALTQSGADWNEFNDAVGDATWILHDSLMDLPGFADLGLQPKAL
FDTEIAARLLGLHRFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDWRNYAALDVEVLIE
LENLMRRDLRAAGKDEWAEEEFTHALSEGLAPRKPHPVPWLRISRITQLSRDPQGLAIAK
SLWQERDKLARQHDIAPSLLLSDSSIIEAATRKPHNAAQFRALRSLNERVRIRTGTEQDK
MFERYAPIQRAVKPKVWKEAIDRAVALRPSQWPSMPAPAPDENGIVNAPRSMRLWQQRHP
DRYDRLQRVRRVITSIAEDTRTPAEMIIKPQILRNLCWVENPAEVDVEEFLIAQGARNWQ
VKLVAPSVSGVIM
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
ttgagtgacgtccatgacaccgaaccacggttactgaaagagccgcgcgggggagtgccg
gatgttacctcgacgattgaaggctatcatcacgtctgcgaagcgttggctgatgcttct
ggctccttggccgccgatgccgaacgcgcatccggattccgttatggccacgaggattgg
ctgattcaatgcaaacgagaaggtgcgggcatcgcgttgctcgaccccatcgccttgacc
caatctggtgccgactggaacgaattcaatgatgccgtgggcgatgccacttggattttg
catgattccctgatggatttgccgggattcgctgatctgggacttcagccgaaggcgctg
ttcgacacggagatcgccgcgcgtctgctcggtttgcatcgattcggattagccgccgtc
actgaacattatcttggcatcactttggccaaggaacattctgcggctgactggtcctac
cgcccgctgccacgagactggcgcaactatgcggcgcttgacgtggaagtgctgatcgag
ctcgaaaacctgatgcgccgtgatctgagagccgccggcaaggacgagtgggctgaagag
gaatttacccatgcactgtccgaaggactcgcccctcgcaaaccccatccggttccgtgg
ctgcgcatttcccgcatcacccagctgagccgtgatccgcagggattggccatcgccaag
tctctgtggcaggagcgggacaaactggcccggcagcatgacattgcccccagcctgctg
ttgtctgattcctcgattattgaggctgcgacgcgcaagccgcataatgccgcccagttt
cgggctttgcgttcgctcaatgaacgtgtgcgcattcgcaccggtaccgagcaagacaag
atgtttgagcgctatgccccaatccagcgtgccgtcaaacccaaggtctggaaagaggcc
attgatcgggccgtggcgctgcgcccttcccaatggccgagtatgccggcacccgcgccg
gacgagaacggcatagtgaatgcgccgcgttcgatgcgactctggcagcaaaggcacccc
gaccgatatgaccgactgcaaagggtccgtcgcgtgatcacttcgatagccgaagatacg
cgtacgccggccgagatgattatcaagccgcagattctgcgcaacctatgctgggtggag
aatccggccgaagtggacgtcgaggagttcctgatcgcgcagggcgcaagaaactggcag
gtgaaactcgttgcaccgtccgtaagtggcgttattatgtag
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