Bifidobacterium breve NCFB 2258: B2258_0850
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Entry
B2258_0850 CDS
T03122
Name
(GenBank) ATP-dependent DNA helicase pcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
bbrn
Bifidobacterium breve NCFB 2258
Pathway
bbrn03420
Nucleotide excision repair
bbrn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bbrn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B2258_0850
03430 Mismatch repair
B2258_0850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbrn03400
]
B2258_0850
Enzymes [BR:
bbrn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B2258_0850
DNA repair and recombination proteins [BR:
bbrn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
B2258_0850
MMR (mismatch excision repair)
Other MMR factors
B2258_0850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
AHJ21056
LinkDB
All DBs
Position
1034925..1037600
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AA seq
891 aa
AA seq
DB search
MYDEPEVIARSAQELVGDLNPQQAEAVQYRGQALLIGAGAGSGKTRVLTRRIAWILSQFG
AWPSQILAITFTNKAAVEMRERLGSLIGPVAQRMWVSTFHSACVRILRRDGKSIGLKSGF
SIYDSADSERLVKIIATEFNLDIKRYTPRSILGHISDLKNNLTGWKENLAVHAPDFTPGQ
RGYQFGTVGDLEAIYAVIYAEYEHRLALANAVDFDDLIGRTVELLRTDPAVAEYYHHRFR
YILVDEYQDTNHAQYVLVRELAGVDTGEKAIPGSPNAGKSGPAWITVVGDSDQSIYAFRG
ADIRNIQDFEQDFPNAKTIMLEQNYRSTQTILDAANAVISNNEGRKPKKLWTALGKGEPI
VGYAADNAQQEAQWVATEIARLHAEEDIAYSDMAIMYRANAQSRSLEEALINAGLPYQLV
GGTKFYERREIKDALAYLQALVNPDDDVNLRRILNVPKRGLGNRAEGILLAYARERGTSF
FYALMHLDEIQDVPTRTATQLKAFRDLMGELSQFTRAHDAKPSEIVAEVLEKSGLRAELE
KSVDPQDASRLENLSQLQSTAAEFEQNTPDATLSAFLETTALVADSDQLPGEAEDSGKVT
LMTLHTAKGLEYPVVFLTGMEQGTFPHSRSMEDTTELQEERRLAYVGITRAKQRLYVTRA
AVRSQWGQAADMMPSQFLDEIPDSLIDWKRREAGVERMRANWESDGFADDYGGWDDDDFG
GTTFGGSSTFGSRGSGSSYGSRSHYGSSSYGSGSSYGSRSGGSSYGSRSGSSYGSRSRSG
SSYGSGSGSSYGSRSRSGPASGGTRAGKVTTRHTTPKSGSAGSSMPSSKLAKDNGLNISD
FAVGDMISHDQYGLGKVTDAQDKGRNSVITVDFGSAGVKRLMLRVAPIEKL
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
gtgtacgacgagccggaagtcatcgcccgcagcgcgcaggaactcgtaggcgacctgaac
ccgcagcaggccgaagccgtgcaataccgcggccaggcgctgctgatcggagccggcgcc
ggttccggcaaaacccgagtcctcacccgacgcatcgcatggatcctgagccagttcggc
gcatggcccagccagatcctggccatcaccttcaccaacaaggccgccgtcgagatgcgc
gaacgactcggctcgctgattggcccggtggcccagcgtatgtgggtctccaccttccac
tccgcctgcgtgcgcatcctgcgccgcgacggcaaatccatcggcctcaaatccggcttc
tccatctacgattccgccgactccgagcgactcgtcaaaatcatcgccaccgaattcaac
ctcgatatcaagcgctacaccccgcgttcgatcctcggccacatctccgacctgaaaaac
aacctgaccggctggaaggaaaacctcgccgtccatgcgcccgacttcacgcccggccag
cgcggctaccagttcggcacggtgggcgaccttgaagccatctacgcggtgatatacgcc
gaatacgagcacaggctcgctctggccaacgccgtcgacttcgatgatctgattgggcgc
acggtcgaactgctgcgcaccgacccggccgtcgccgagtactaccatcaccgtttccgc
tacattctggtcgacgagtatcaggacaccaaccacgcccagtatgtgctcgtacgcgag
ctggccggcgtggacacaggggagaaggctattccgggctcgccgaacgcaggcaaatcc
ggccctgcttggatcaccgtcgtgggcgattctgaccagtccatctatgccttccgcggc
gccgacatccgcaacatccaggatttcgaacaggacttcccgaacgccaagaccatcatg
ctcgaacagaactatcgttcgacgcagaccattttggacgcggccaacgcggtgatcagc
aacaacgagggacgcaagcccaagaaactgtggacagcactcggcaaaggcgagccaatc
gtcggctacgcggcggataacgcccagcaggaggcccagtgggtggccaccgaaatcgcc
cgactgcacgccgaagaagatatcgcctactctgacatggcgattatgtatcgcgccaac
gcgcagtcccgctcgctcgaagaggcgttaatcaacgcagggctgccgtaccagctcgtc
ggcggcaccaagttctacgaacgccgtgaaatcaaggacgcgctggcctacctgcaggcg
ctggtcaacccggatgatgacgtgaacctgcgtcgaattttgaacgtgcccaagcgcggg
ctcggcaatcgtgccgagggcatcctgctcgcctatgcgcgcgaacgtggcaccagcttc
ttctatgcactcatgcatttggatgaaattcaggacgtgcccacgcgtaccgccacgcag
ctcaaggccttccgtgatttgatgggtgagctctcgcaattcacgcgagcacatgacgcc
aagcccagcgagattgtggccgaagtgctggagaagtccggcttgcgtgcagagctggaa
aagtccgtggacccgcaggacgcctcccgtttggaaaacctctcccagctgcagtccacc
gcagccgagttcgagcagaacacgcccgacgccacgctatccgcattcctggagaccacc
gcgctcgtggccgattccgaccagctgcccggcgaggcggaggattccggcaaagtgacg
ctgatgaccctgcacacggccaagggcctcgaatacccggtggtgttcctgaccggcatg
gaacagggcacattcccgcattcgcgttcgatggaggacaccaccgaactgcaggaggaa
cgccgacttgcctatgtgggtattacccgcgccaagcagcgcctgtatgtcacgcgcgca
gccgtacgctcccagtgggggcaggccgccgatatgatgcccagccagttcctcgacgag
atccccgattcgctcatcgattggaaacgccgcgaggccggcgtggaacgcatgcgcgcc
aactgggaatccgatggattcgccgacgattacggcggctgggatgatgacgattttggc
ggtacgacgttcggtgggtcctcgacattcggctctcgcggttcgggttcgtcgtatggc
tcgagatctcattacggctcgtcaagctatgggtctggctcgtcctatggctcccgttcg
ggcggttcatcgtatggctcacgttccggctcctcctacggttcccgctcgcgctcgggt
tcgtcctatggttcgggttccggctcttcatatggttctcgttcccgttccggtccggcg
tccggcggcactcgtgccggcaaggtcactacgcgccacaccacgccgaagtccggttcc
gccggatcttccatgccaagttccaagctcgctaaagataatggactgaatatctctgac
tttgccgtgggcgacatgatcagccacgaccagtacggtctcggcaaggtcaccgacgcg
caggacaagggccgcaattcggtcatcaccgtggacttcggctccgctggagtcaaacgc
cttatgctccgcgtggcaccgatcgaaaagctgtga
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