Bordetella bronchialis: BAU06_07815
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Entry
BAU06_07815 CDS
T04591
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bbro
Bordetella bronchialis
Pathway
bbro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BAU06_07815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbro03019
]
BAU06_07815
03009 Ribosome biogenesis [BR:
bbro03009
]
BAU06_07815
Enzymes [BR:
bbro01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BAU06_07815
Messenger RNA biogenesis [BR:
bbro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BAU06_07815
Ribosome biogenesis [BR:
bbro03009
]
Prokaryotic type
rRNA processing factors
BAU06_07815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
FXR_C1
Zn_ribbon_InsA
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
ANN66211
UniProt:
A0ABN4R4J0
LinkDB
All DBs
Position
complement(1758076..1761327)
Genome browser
AA seq
1083 aa
AA seq
DB search
MKRMLFNATHPEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGIITRIEPGLEACFVNY
GEDRHGFLPFKEIARSYFKEGVDVRTARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRVEGEDRQELRDTMEQLQVPQGMSIIARTAGIGRSVEELQ
WDLSYLLQLWTAIDGAARDNSAPILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQAT
AFMSVVMPDNVQRVKRYRDDVPLFSRFQIEHQIETAYSRTVTLPSGGAIVIDHTEALVAV
DVNSARSTRGADIEETALRTNQEAADEVARQLRLRDLGGLIVIDFIDMEDGKNQRAVEQR
LRDALHFDRARVQMGKISRFGLMELSRQRLRPALNEGSHITCPRCNGTGVIRDAESSALH
VLRLLQEEAMKENTAAVHAQVPVDVATFLLNEKRADIAKMEARLKVNLVLIPNKHLETPH
HHIERLRHDDPRLEEMKTSFELADAPATEVAWAPREQEIKTRPEALVKGITPAQPAPVSA
TPAPAPVAAAPAPAAPGLGGLFKRLVGWFTGGEAAPAAPAPAPQGEAKRGNTRPKSRTHD
GQERRGERHGSERNRNRRHEGRPEAAEGDGLRHHVRGGRRGDGERAERPERAERPERAER
GARAEAQQRAERDIIAEAQAHPERALAPEAVDEAAPARGGRGRRGRGRGRREDQAETPMS
EQESMVAALAETVAAALPPETEDDRADALAESTAAETDEQGLATEAGADPERKRRRRRSR
RGRRASEDGTVVNGEAGQDTLPEGEEALAAEAQAALAEVATPVEPVQAPRHETTASIEEV
SGAAASGAAAPAVDTPFTAAPSRPAHAPADHATQPTPVQAAVPGSTTPQPVAAAPLQPVA
PAVVPAPLAEPIPQRADEAAAPHAVPAAQAAPQVPAAPAPADIAAAPARPLSDAVPTATE
TAAAAAPVAPAPVAPAVTDVQQAQAPAAVPPYAAPQPASVPDTAPAGASAAPAVAPARQP
AAKQNLQDVVNAAGLTWVETDPERHAQTQQRMAASHAPMRLGRERKPVPPVSSGPLVQVE
TRH
NT seq
3252 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcatgttgttcaatgcaacgcaccctgaagagttgcgcgttgccattgtcgat
gggcaaaagcttatcgatctggacatcgaaaccgccggccgcgaacagcgtaaaggcaac
atctacaaaggcatcatcacccgcatcgaacccggcctggaagcctgcttcgtcaattac
ggcgaagaccgccacggcttcctgccgttcaaggaaatcgcccgcagctacttcaaggaa
ggcgtcgacgtccgcaccgcccgtatccaggacgccctgcgcgaaggtcaggaactgatc
gtccaggtcgaaaaggaagaacgcggcaacaagggcgccgccctgaccaccttcatctcc
ctggccggccgctacctggtcctgatgcccaacaacccgcgtggcggcggcgtatcgcgc
cgtgtcgaaggcgaagaccgccaggaactgcgcgacacgatggagcagttgcaggttccc
cagggcatgagcatcatcgcccgcaccgcgggcatcggccgcagcgtggaagaactgcag
tgggacctgtcctatctgctccagctgtggacggccatcgacggcgcggcccgcgacaac
tcggcgcccatcctgatctacctggaatccagcctggtcatccgcgccattcgcgattat
ttctcgcccgaaatcggcgagatcctgatagataccgacgagatcgcggatcaggccacc
gccttcatgagcgtggtcatgccggacaacgtccagcgcgtgaagcgatatcgcgacgat
gtgccgctattttcgcgcttccagatcgaacaccagatcgaaaccgcctattcgcgcacg
gtcaccctgccctcgggcggcgccatcgtcatcgatcacacggaagcgctggtcgcggtg
gacgtcaactccgcccgttccacgcgcggcgccgatatcgaggaaaccgccctgcgcacc
aaccaggaggcggccgacgaagtggcgcgccagctgcgcctgcgcgacctcggtggcctg
atcgtcatcgatttcatcgatatggaagacggcaagaaccagcgtgccgtcgaacagcgc
ctgcgcgatgccctgcacttcgaccgcgcccgcgtccagatgggcaagatctcgcgtttc
ggcctgatggaactgtcgcgccagcgcctgcgtccggccttgaacgaaggctcccacatc
acctgcccgcgctgcaacggcaccggcgtgatccgcgacgcggaatccagcgccttgcac
gtgctgcgcctgctgcaggaagaagccatgaaggaaaacaccgcggcggtccacgcccag
gtgccggtcgatgtggccaccttcctgctgaacgaaaagcgcgccgacatcgccaagatg
gaagcccgcctgaaggtcaatctggtgctgattcccaacaagcacctggaaaccccgcat
caccatatcgaacgcctgcgccacgacgacccgcgcctggaagagatgaagaccagcttc
gagctggccgatgcgccggccacggaagtcgcctgggcaccgcgcgaacaggaaatcaag
actcgcccggaagccctggtcaagggcatcaccccggcgcagccggctccggtgtccgcc
acgccggcccctgcccccgtcgcggccgccccggcgcccgctgccccgggcctgggcggg
ctgttcaagcgcctggtcggctggttcacgggcggtgaagccgccccggccgcgccggct
cccgccccgcagggcgaggccaagcgcggcaacacccggccgaaatcccgtacccacgac
ggccaggagcgccgaggcgaacgccacggttccgaacgcaatcgcaaccgccgccatgaa
ggccggccggaagccgccgaaggcgacggtctgcgccaccacgtgcgcggtggacgccgt
ggcgatggggaacgcgccgagcgccccgagcgtgccgaacggccggagcgcgccgaacgt
ggcgctcgcgccgaagcccagcaacgcgccgaacgcgacatcatcgccgaggcgcaagcg
catcccgaacgcgccctggcgccggaggccgtggacgaggccgctcccgcccgtggcggc
cgcggacgccgcggccgcggacgtggccgccgcgaagaccaggccgaaacgcccatgagc
gaacaggaaagcatggtcgccgccctggccgagacggtcgccgccgcgctgccgcccgaa
accgaggacgaccgcgccgacgccctggccgaaagcactgcggccgagacggatgaacaa
ggcctggccacggaagccggcgccgatcccgagcgcaagcgccgccgccgccgcagccgc
cgaggccgccgcgcctcggaggacggtaccgtggtcaacggcgaagccggccaggacacg
ctgcccgagggcgaagaagccctggcggcggaagcccaggccgcgctggcggaagtcgcc
acgccggtcgagcccgtccaggcaccgcgccatgaaacgaccgcctcgatcgaggaagtg
tcgggtgccgccgcgtcgggcgccgcagcgccggccgtggatacgccgttcaccgctgcc
cccagccggcccgcgcatgcgccggccgatcatgccacgcagcccacgccggtccaggcc
gccgtgcccggttcgacgacgccgcagcccgtggccgcggcgcccttgcaaccggtcgcc
ccggccgtcgtgccggcgcccctcgccgagccgataccccagcgcgccgacgaagcggcc
gccccgcacgctgtgcccgcggcgcaggccgccccgcaggtgcctgccgcccccgccccg
gcggacatcgcggcggcgcccgcccggcccttgtccgacgcggtcccgacggcgactgaa
acggctgccgccgcggcgcccgttgcccccgctccggtggcaccggccgtcacggacgtc
cagcaagcccaggcgcctgccgcggtcccgccctacgcggcgccgcagccggccagcgtg
ccggacacggcacccgcaggcgcatccgcggccccggccgtcgcgcccgcgcgtcagccc
gccgccaagcagaacctgcaggacgtggtcaatgcggctggcctgacctgggtggaaacg
gaccccgagcgtcacgcccagacccagcagcgcatggcggccagccacgctcccatgcgc
ctgggtcgcgagcgcaagcccgtgccgccggtgtcctcgggcccgctggtacaggtggaa
acgcgccactaa
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