Bordetella bronchialis: BAU06_16955
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Entry
BAU06_16955 CDS
T04591
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
bbro
Bordetella bronchialis
Brite
KEGG Orthology (KO) [BR:
bbro00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbro03019
]
BAU06_16955
Enzymes [BR:
bbro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BAU06_16955
Messenger RNA biogenesis [BR:
bbro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BAU06_16955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
T2SSE
NACHT
nSTAND3
AAA_25
SLFN-g3_helicase
TsaE
Motif
Other DBs
NCBI-ProteinID:
ANN69727
LinkDB
All DBs
Position
complement(3841298..3845251)
Genome browser
AA seq
1317 aa
AA seq
DB search
MPSRRGRAAPEAVAPSRPASPPATAPAPAPRAIPAIRYPEDLPVSARRDEIARAIAAHQV
VIVSGETGSGKTTQLPKICLDLGRGRTRMIGHTQPRRLAATSVARRIADELETPLGEVVG
YQVRFNDRTGPNAAIKLMTDGILLAETQRDPLLKRYDTLIIDEAHERSLNIDFLLGYLKR
VLPRRPDLKVIITSATIDAERFARHFAEAPDRAAPVIEVSGRLYPVEVRYRPVRRDDVDD
DAGPASGRAAAPDAGARPARERAGDEERDLIDAIVDAVDECARHGPGDILVFLPGEREIR
EASEALRKQHPVGTEVLALYARLSQAEQEQIFRPRGSGRRVVLATNVAETSLTVPGIRFV
VDSGLARVKRYSWRNKVEQLRIEPVSRASANQRAGRCGRVGPGVCIRLYDEADFNARAPF
TDPEVLRSSLASVILRMKSLKLDDIEDFPFVEAPPGRAIADGYHLLQELGAIETVQRGEQ
DGAEGSGDDQPRIVYTLTRTGQELARLPLDPRIGRMILAAREQQCLAEMLVIASALSIQD
PRDRPMQEKEAAENAHAKFADDKSEFLSFLKLWRWYGEQVQHKASQRKLVGLLRQNFLSP
LRLREWHDVHTQLAAVVGEQGWRLNQAEATFEQIHMALLSGLLGNIGYKSDEGGHYQGAR
DIRFHIHPSSRLARKAGRWIVAAELVETTRLYARCVARIEPAWIERAAAHLLRRNWSDPR
WEKKAGQVVANERATLYGLTIYTGRRVHYGRINPDHAREIFIRDALVPGELDTRLPFVAH
NRRLIAEIEKLEHRARRPDILVDDTLIQAFYDRQIPAGMSQLATLEKWYAGLDKPAADAL
LLTRDALMRHEAAGITTEVFPKKVEWQGVTMALDYHFEPGSPRDGVTLSVPLFALNQIDP
QRCEWLVPGMLKEKVHLLLKSLPQKIRRHCVPLPDYAAGFYDRWFDRLGDPQQGLLDALA
TDMWDQVKVRPQPADFKLETLPAHLFMNFRVVDEHGRMLAAGRNLASLKAEFGRQAQADF
QQLAARDTQVAQALAQDGLTSWSFGELPEIMEIKRKGQSVIGYPALVDRGTHCDLDVFDD
PDEARKHHRAGLLRLFRLGLREQIKFLEKNLPDLTRMSMLFMPLGTQEFLRDQIIDCALE
RACLADPWPVNQAEFESRRLEGKSRLGLLAQEVARLAAAVLAEWAALQRKLPQAKAHAAA
YADLQQQVGALVPPAFLRESPYAQLAHFPRYLKAAVARIDKLRADPGRDQRLMAEMAPLL
TQYQRARAALKGAPDARLDEFRWLLEELRVALFAQELRTPMPVSVKRLQKSWESMRR
NT seq
3954 nt
NT seq
+upstream
nt +downstream
nt
attccctctcggcgcggccgggccgcgcctgaagcggtcgcgccgtcccgtcctgcctcg
ccgcccgccaccgcccccgctcccgcgccgcgcgccattccggccatccgctatcccgaa
gacctgccggtcagcgcccgccgcgatgagatcgcgcgcgcgatcgccgcccaccaggtc
gtcatcgtcagtggcgaaaccggctccggcaagaccacgcagctgcccaagatctgcctg
gacctggggcgcggccgtacgcgcatgatcggccatacgcagccgcgccggctggcggcg
acctcggtggcgcgccgcatcgccgacgagctcgaaaccccgttgggcgaggtcgtcggc
taccaggtccggttcaatgaccgtaccgggcccaacgcggcgatcaagctgatgaccgac
ggcatcctgctggccgagacgcagcgcgatcccttgctcaagcgctacgacacgctgatc
atcgacgaggcgcacgagcgcagcctgaacatcgatttcctgctcggctatctgaagcgc
gtgctgccgcggcggccggacctgaaagtcatcatcacgtccgccaccatcgacgccgaa
cgcttcgcccggcatttcgccgaggcgccggatcgggccgcaccggtcatcgaggtctcc
gggcgcctgtatccggtcgaagtccgctatcgcccggttcgccgcgacgatgtcgacgac
gatgccgggccggcatccggccgggccgccgcgcccgatgccggtgcccgtccggcgcgc
gagcgcgccggggacgaagagcgcgacctgatcgacgccatcgtcgacgccgtggacgaa
tgcgcgcgccacggccctggcgatatcctggtcttcctgcccggcgaacgcgagatccgc
gaggcctccgaggctttgcgcaagcaacaccccgtcggcaccgaggtcctggcgctgtac
gcgcgcctctcgcaggcggaacaggaacagatcttccggccgcgcggcagcggccggcgc
gtggtgctggccaccaatgtggccgagacctcgctgacggtccccggcatccgcttcgtg
gtcgatagcggcctggcgcgggtcaagcgctattcctggcgcaacaaggtcgagcagctg
cgcatcgagcccgtcagccgcgcctccgccaaccagcgcgcgggacgctgcgggcgcgtc
ggcccgggcgtctgcatccgcctgtacgacgaggccgacttcaacgcccgcgcgccgttc
accgatccggaggtcctgcgttcatcgctggcttccgtgatcctgcgcatgaagtcgctc
aagctcgacgacatcgaggattttcctttcgtcgaggcgccgccaggccgcgccatcgcc
gacggctaccacctgctgcaggagctcggcgccatcgaaaccgtgcagcgcggcgagcag
gacggtgcggaaggcagcggcgatgaccagccccgcatcgtctacaccctgacccgcacc
ggacaggagctggcgcgcctgccgctggatccgcgcatcggccgcatgatcctggccgcg
cgcgaacagcagtgcctggcggaaatgctggtcatcgcgtcggcgctgtccatccaggac
ccgcgcgaccgtcccatgcaggaaaaggaagccgccgagaacgcgcatgcgaaattcgcc
gacgacaaatcggaattcctgtccttcctgaagctgtggcgctggtacggcgaacaggtc
cagcacaaggcatcgcagcgcaagctggtgggcctgctgcgccagaacttcctgtcgccg
ctgcggctgcgcgaatggcacgatgtccatacgcaactggccgcggtggtgggcgaacaa
ggctggcgcctgaaccaggccgaagccaccttcgaacagatccatatggcgctgctcagc
gggctgctgggcaatatcggctacaaaagcgacgagggcgggcattaccagggcgcgcgg
gacatccgcttccatatccatcccagctcgcggctggccaggaaggcggggcgctggatc
gtcgcggccgaactcgtggaaaccacgcgcctgtatgcgcgctgcgtcgcccgcatcgag
ccggcctggatcgaacgcgccgcggcgcatctgctgcgccgcaattggtccgatccgcgc
tgggaaaaaaaggccgggcaggtggtcgccaacgaacgcgccaccttgtatggcctgacc
atctacaccggacggcgggtgcactacggccgcatcaaccccgaccatgcccgcgagatt
ttcatccgcgatgcgctggtaccgggggagctggacacgcgcctgcccttcgtcgcccac
aaccgccgcctgatcgccgagatcgagaaactggagcatcgggcgcggcggccggacatc
ctggtggacgacacactgatccaggccttctacgacaggcagatcccggccgggatgagc
cagctggcaaccctggaaaaatggtacgcgggcctggacaagcccgcggccgacgcgctg
ctgctgacccgcgacgccctgatgcgccatgaggccgccggcatcacgaccgaggtcttt
cccaagaaggtggaatggcagggcgtcaccatggcgctggattaccacttcgaacccggc
tcgccgcgcgacggcgtgacgctttccgtgccgctgttcgcgctgaaccagatcgacccg
cagcgctgcgaatggctggtgcccggcatgctcaaggaaaaagtccacctgctgctgaag
tcgctgccgcagaagatacgccgccactgcgtgcccctgcccgactatgccgcgggtttc
tacgaccgctggttcgatcgcctgggcgacccccagcaggggctgctcgacgccctggcg
acggatatgtgggatcaggtcaaggtccgcccccagcccgccgatttcaagctggaaacg
ctgccggcgcatctattcatgaatttccgcgtggtcgacgagcatgggcgcatgctggcg
gccggccgcaacctggcctcgctgaaggccgagttcggccgccaggcgcaggcggatttc
cagcagctggccgcgcgcgatacgcaggtggcgcaggcgctggcccaggatggcctgacc
agctggtccttcggcgaactgccggaaatcatggagatcaagcgcaagggccagtccgtc
atcggctatccggcgctggtggaccgcggcacgcactgcgacctggacgtcttcgacgac
cccgacgaggcgcgcaagcaccatcgggccggcctgctgcggctgttccggctgggactg
cgcgagcagatcaagttcctggaaaaaaacctgcccgacctgacccgcatgagcatgctg
ttcatgccgctgggcacgcaagagttcctgcgcgaccagatcatcgattgcgccctggag
cgggcttgcttggccgacccctggccggtcaatcaggcggagttcgagtcgcggcgcctg
gaaggcaaaagccggctgggactcctggcgcaggaggtcgcgcggctggccgcggcggtg
ctggcggagtgggccgcgctgcagcgaaaattgccccaggccaaggcgcatgcggcggcc
tatgcggacctgcagcagcaggtcggcgccctggttccgcccgccttcctgcgtgagtcg
ccttatgcccagctggcgcatttcccccgttacctgaaggcggccgtcgcgcgcatagac
aagctgcgtgccgatccggggcgcgaccagcgcctgatggccgagatggcgcccttgctg
acgcaataccagcgcgcccgcgcggcgctcaagggggcgcccgacgcgcgcctggacgag
ttccgctggctgctcgaagagctgcgggtggccctgttcgcgcaggagctgcgtacgccc
atgccggtatcggtgaagcgcctgcagaagtcctgggagtcgatgcggcgctag
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