Bifidobacterium breve S27: BS27_0496
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Entry
BS27_0496 CDS
T03123
Name
(GenBank) ATP-dependent DNA helicase, UvrD/REP family
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
bbrs
Bifidobacterium breve S27
Pathway
bbrs03420
Nucleotide excision repair
bbrs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bbrs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BS27_0496
03430 Mismatch repair
BS27_0496
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbrs03400
]
BS27_0496
Enzymes [BR:
bbrs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BS27_0496
DNA repair and recombination proteins [BR:
bbrs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BS27_0496
MMR (mismatch excision repair)
Other MMR factors
BS27_0496
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
XdhC_CoxI
DEAD
Motif
Other DBs
NCBI-ProteinID:
AHJ24362
LinkDB
All DBs
Position
629380..633315
Genome browser
AA seq
1311 aa
AA seq
DB search
MSAFIPSVEQAAIINAPAQDDVLVVAGAGSGKTFTMTQRIIALINRGVAPERILGLTFTR
KAAGELLERVSAAVSREDSPAAQGAQTPGASTPNFDRAFLKPAIFTYDAFFQTIVRQYGL
LVGFDQNTQPLSEAGALQLATEVIDEHMDQALSEDLGAFTSLARSVLALSGAIGSAMIGS
GCTGFDEAVERVRQWDSVFVDALRLALENEDIPDIEPTIPKIKRLKKDSDTDWQAKLDDR
AQRLHARCAYHCAQLLEITRKREVLLQLVEAYAQAKRQKNMAEFSDFTIAAYQLIERFPS
IGERTRCRYSHVLLDEYQDTSTTQAALLAALFHVNNSERCAVNAVGDPFQSIYAWRGASP
GAFRMFQRDFHMPAESKPFPLSVTRRNSRIVLEAANDLTLPLRSRPARPSSSLMREVDVS
SLDPMPDAPEGTLGVLGLATAGQEIDAVVRFCKAAIARYRDAGAAQEAPVAVLFRSRSHM
PEYQEVLEKAGLTTFVVGYSALLERPEIRDVLALLHVVADHTDTGALMRLLATPRFGLSS
DDLTALACAAEAQNMEQRFRALVQAGVAPADTPRSQWGAVVREHRDQVANAVFLPDLLMQ
DNSSVRLDQLSAHGRHAVEQAVEALRQVHDMVGRSITDVIRAAIEALNLDIDTVLAGALR
DPQHRVNPSLARMPMDSIVDLVDTYTQEIAVEQTPTLRGFMAWVDHLATVEDEAAKLPGS
PVDVELMTVHQSKGLEWDAVAVVGLNAGGFPSNQGDHLKVVLDDSHPGGTEQGQWTAPEY
HESADSWLTSPVAVPVPVRADAGILPRFPHDADVHGDPIDSLRNLDDVELIDDEVFGSMR
EFGDGVEEVDPQSWYLTQSEEYGRRLHADERRLAYVALTRARNDALLTYCRYTGESSRDC
TNVPKGSRAASPSNFWLEVHDALHGHDHAIEAQAYVEGLGSEVALVSPQGDPIDPPEGFI
VGENAEQYCDAVVGDAWRTPLEQTSGRNALPWPASLGEDTAEHLTRGLALVRNAINGKRN
AKDDGHNPAGPLLQRAQLLVDDDDLMTGTLEGAALDRAVKAKAQRILAAGRQNVTSLQAR
VGGMSQQEERSYWRSVIRPIPRVSSPAAEAGTRFHDWAERFINAGKPDEAASSVDSSAAE
IITTGNGVSRSDLLADLNAIDQQSVPVCDRNLMIWQQRLASSSWAQRTPVWAERSIVVDV
PEVGIVNGKLDAVFLGGINPADTSKRYTVVDWKTGHRPTKPDDVEHKLAQLDMYRLLLAA
VEGVELDSIDATLYYVSEPDEGLRELHARAKTKQEILTELSSGIPEQSDND
NT seq
3936 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcttttattcccagcgtagaacaggcggccatcatcaacgctcccgctcaggat
gacgtactggtggtggccggagccggctctggcaaaacctttacgatgacccagcgcatc
atcgcgctcatcaaccgcggtgttgcgccggaacgcatactgggcctcacctttacccgc
aaagctgccggagagttgctcgagcgtgtatccgcagcggtatcgcgcgaagattctcct
gcagcacagggcgctcagactcctggcgcctcaactcccaacttcgacagggcgttcctg
aaaccagccatttttacctatgatgccttcttccaaaccatcgtgcgccaatatggtctg
ttggttggtttcgatcagaatactcagccactcagcgaggctggagcgctccagctcgcc
actgaagtcatcgatgagcatatggatcaggctctgagcgaggatttgggcgcattcacc
agtcttgccagaagcgtgctggcattatccggtgcaatcggcagtgccatgattggttcc
ggctgcaccggattcgatgaggctgtggaacgcgtgcgtcagtgggactcggttttcgtc
gacgcgcttcgcctcgctcttgagaacgaggacattcccgatatcgagccgacaattccc
aagattaagcgactcaaaaaagacagcgacaccgattggcaggcgaagctggacgacagg
gcgcagcggttgcatgcgcgctgtgcctaccattgtgcacaactgttggaaatcacgcgc
aagcgcgaagtgctgctgcaattggtcgaggcctacgcacaagccaaacgccagaagaac
atggcggaattctctgatttcaccattgcggcatatcagctcattgagcgattcccctcc
atcggagagcgtacgcggtgtcgctacagtcatgtgctgctcgacgaataccaggacacc
tccaccacgcaggcggcactgcttgccgcattgttccatgtgaataactccgaaaggtgc
gcggtcaacgccgtgggcgatccgttccagtccatctatgcttggcgaggagccagcccg
ggtgcgttccgcatgttccaacgtgactttcatatgccagcggagtccaagccattccct
ctttcggtcacacgccgtaacagtcgcatcgtgcttgaagcggccaacgatctgacgctg
ccgttgcgttcgcgccctgcccgtccctccagttcgttgatgcgcgaggtcgacgtatcc
tcgcttgaccccatgcctgacgcgcctgaaggcacgcttggtgtgctgggattggccact
gcggggcaggaaatcgatgctgtagtgcgcttctgcaaggccgccatcgcgcggtatcgc
gatgccggggccgcgcaggaggcgccggtcgccgtgctgttccggtccagatcccatatg
cccgagtatcaggaggtattggagaaggccggtctcaccacgtttgtggttggatattcc
gctctgctggagcgcccagaaatccgcgatgtgctggcattgctgcacgtcgttgccgac
cataccgataccggagcgttgatgcggttgcttgccactccacggttcggtctttcttcg
gatgacctgaccgcactggcctgcgccgccgaagcgcagaatatggagcaacggttccgg
gctttggtgcaggccggtgtggctcctgctgatacgccgaggtcgcaatggggtgccgtg
gttcgcgaacatcgcgatcaggtggccaatgcagtgtttttgccggatctgctgatgcag
gataattccagtgtgaggttggatcagctcagtgctcacggtagacatgccgtcgaacag
gctgtggaggcactgcgtcaggtgcacgatatggtcggccggtcaatcacagatgtgatt
cgtgcggccatcgaggcgttgaatctcgatatcgataccgtgcttgccggtgctttgcga
gacccgcagcatcgtgtcaatccatcgctggcccgcatgcccatggactccattgtggat
ttggtggacacctatacgcaagagatcgctgttgaacagacgcccacattacgtggattc
atggcatgggtggatcatcttgccactgtggaagacgaggctgccaaactgcctggctct
ccggtggatgtggaattgatgaccgtgcaccaatccaagggattggaatgggatgcggtt
gccgtagtggggcttaatgccggaggatttcccagcaatcagggggatcacctcaaagtc
gtgctggatgacagccatcccggtggcactgaacaaggccaatggacagctcccgaatac
cacgagagcgcggattcgtggttgaccagccctgtggccgtaccggtgcccgtacgagcc
gatgccggaatcctgccgcgattccctcatgacgccgatgtgcatggcgatcccattgac
tcgttgcggaatctcgacgacgtggaactcatcgatgatgaggtgttcggctccatgcgc
gaattcggcgatggcgtggaagaggtggatccgcaaagctggtacctgacccagtccgag
gaatatggccgcagactgcacgctgacgaacgccgtctggcatacgtggcgcttacccgc
gcccgcaacgacgccttgctgacctattgccgctataccggcgaatccagccgcgattgc
acgaacgtgccgaaggggtctcgcgccgcaagtccgtccaacttctggcttgaggtgcat
gacgcgttgcatggccacgaccatgcaatcgaagctcaggcatacgtggaaggtctggga
tccgaagtggcgctggtctcgccccagggtgatcccattgatcctcccgaaggcttcatc
gtgggggagaacgccgaacagtactgtgatgctgtggttggcgacgcatggcgtacgccg
ctggaacagacctccggccggaatgcattgccatggccggcgtcattgggcgaagacacc
gcggaacatctgacccgcggtctcgccttggtgcgtaatgccatcaacggaaagcgcaac
gcaaaagacgacggccacaacccggccggtccattgctgcaacgtgcgcaattgctggtc
gatgacgacgatctcatgaccggcacattggagggtgcggcactcgacagggctgtcaaa
gccaaagcccagcgcattctggctgcgggacgtcagaacgtcaccagcttgcaggcgcgg
gtgggtggtatgagccaacaggaggagcgctcctactggcgcagcgtgatacggcccatc
cctcgcgtgtcctcgccggctgccgaagcgggcacacgcttccacgactgggccgagcgt
ttcatcaatgccggtaagccggatgaggccgcatcgtcggttgattccagcgccgccgaa
atcattaccaccggcaatggcgtatcccgcagcgacctattggccgacctgaacgccatc
gaccaacaatctgtaccggtctgcgaccggaacctcatgatatggcagcagcgtctggcc
tcgtcttcatgggcgcaacgcaccccggtatgggccgaacgctcaatcgtggtggatgtg
ccggaagtcggcatcgtgaacggcaaattggacgcggtgttcctcggcggaatcaatcca
gccgatacctccaaacggtacaccgtggtcgattggaaaaccggtcatcggcctaccaag
ccggatgatgtggagcataaactcgctcagctcgacatgtatcggttactgctcgccgcg
gtcgagggcgtggaattggacagtatcgacgccactctctactatgtcagtgagcccgat
gaaggcttgcgcgagcttcatgcccgcgcgaaaaccaaacaggaaatccttaccgagttg
agctccgggatccccgaacaatctgacaacgactga
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integrated database retrieval system
