Bifidobacterium breve S27: BS27_1320
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Entry
BS27_1320 CDS
T03123
Symbol
dnaE
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bbrs
Bifidobacterium breve S27
Pathway
bbrs03030
DNA replication
bbrs03430
Mismatch repair
bbrs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bbrs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BS27_1320 (dnaE)
03430 Mismatch repair
BS27_1320 (dnaE)
03440 Homologous recombination
BS27_1320 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bbrs03032
]
BS27_1320 (dnaE)
03400 DNA repair and recombination proteins [BR:
bbrs03400
]
BS27_1320 (dnaE)
Enzymes [BR:
bbrs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BS27_1320 (dnaE)
DNA replication proteins [BR:
bbrs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BS27_1320 (dnaE)
DNA repair and recombination proteins [BR:
bbrs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BS27_1320 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
MCM10_OB
DUF655
DUF5487
Motif
Other DBs
NCBI-ProteinID:
AHJ25113
LinkDB
All DBs
Position
complement(1562657..1566214)
Genome browser
AA seq
1185 aa
AA seq
DB search
MADYGKNFVQLHNHTHYSLLDGASKIPDLAKRAAELEMPAVGITDHGNMHGAYEMYTNCV
ANGVKPIIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNL
IKASSVANLEGRVMRYPRMDKEVLSTYSKGVIASSGCPSGIIQTRLRLGQFDEALRAAGE
FQDIFGKDNFFIELMDHGLTIENQVTDDLLTIAKKLDAPLLATNDSHYVHAEDAGAQDAM
LCINSGSRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLLIAERCNVMFDDHED
GAFMPQFPCPEGWDETSLFLKKVEEGLEKRYDGNPPLNVLKQADYECGVICQMQFCGYFL
VVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPERVSLPDI
DVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGEKVTKA
LPPAATGGKDISLHDIFDPSAKRYAEAREFREMYDSDPDAKRITEEAKGIEGLIRQTGVH
ACATIMGSAPITDTSPLLERTDGTITTTFEYHTCETLGLVKMDFLGLSNLTVIHDTLKNI
EANGKPAIDYTKIPLDDAETYKLMARGDTLGVFQLDSDGMRSLLKTLKPDNFNDISALIA
LYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIYQEQVQSAARIL
AGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEAANAVWDILVPFSGYAFN
KAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARRMGIQVLSPDVN
ESVYAYSAVGDVVRFGLGAIRNVGDKAVADIIAEREGPRGKFVNFMDFIRRVPLTALNRR
LVESLIKAGAFDSIDPNRRALFTVHEAAIDSVVSLKRKQAEGQFDLFSDADDGGAEAMGD
ASVTVPDIEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSIAHLIDRAKTMGE
GQQVTLAGLITGVDRRVSKKGNPWAIVTIEDMESSIQCMFFGKVYEAAAAELAVDAIVQI
RGQVELRDETVSMRATELQVPTLESEDERPLTITLPHAALDRQHMMQLGQVLTNHPGYCE
VHLAVMDEKGNAQVLTFGDRFRVKRDTSLFAEIKILFGPSCLPAA
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atggctgattacgggaagaacttcgtgcaactgcacaaccacacgcactattcattgctt
gatggtgcgtcgaagatcccggatctggccaagcgagccgccgaacttgagatgccggca
gtcggcattaccgatcatggcaacatgcacggtgcctatgagatgtacaccaactgtgtg
gccaacggcgtcaagcccatcatcggcatcgaagcttacgtgaccccggaaaccgcgcgt
caggacaagtcccgtgtgcactggggcaccgaagctcagcgtcgtgatgacgtttccggt
ggtggtctcatcacccacctgaccatgtgggcggaaaacgacgaaggtctggtcaacctc
atcaaagcctcgtccgtggccaatcttgaaggccgcgttatgcgctacccgcgtatggat
aaagaagtgctgtccacctactccaaaggtgtgatcgcgtcctccggatgcccttcgggc
atcatccagactcgtctgcgcctgggacagttcgacgaggcattgcgtgccgctggtgaa
ttccaggacatcttcggtaaagacaatttctttatcgaactcatggatcacggtctgaca
atcgagaaccaggtcaccgacgacctgctgaccattgccaagaagctggacgccccgctg
ctggccaccaacgattcccattatgtgcatgccgaagatgccggcgcacaggatgccatg
ctgtgcatcaactccggctcccgactggatgatccggatcgattcaagttcgacggcacc
ggctattacatcaaaaccgccgaggagatgcgcgagctgttcaaggatcatcccgacgct
tgcgacaatacgttgctcattgccgaacgttgcaacgtcatgttcgatgatcacgaggac
ggcgctttcatgccgcagttcccctgtccggaaggctgggacgagacctcgctgttcctg
aagaaggtcgaagagggactcgaaaagcgttatgacggcaatccaccgctgaacgtgctc
aagcaggccgattatgagtgcggtgtgatctgccaaatgcagttctgcggttacttcctc
gtcgtggccgattacatccaatgggccaaggaccacggcatcatggtggggccgggccgt
ggttcggctgcaggcgccatggtcgcctattccatgggcatcaccgagctcgacccgttg
aagcacggcctgattttcgagaggttcctgaacccggagcgtgtgagcctgccggatatc
gatgtcgacttcgatcctgaaggccgtgcccgagtcatcgaatactgcggtgaaaaatac
ggcaccgacaaggttgcccaatgcgtgatctacggcaccatcaaaaccaagcaggcgctg
aaggactccgcccgcatcatgggttatgaattctcggttggagaaaaagtcactaaggcc
ttgcccccggcggccaccggcggcaaggacatcagcctgcatgatattttcgacccttcg
gccaaacgatatgccgaggccagggaattccgcgagatgtacgattccgaccccgatgcc
aagcgcattactgaggaggccaaaggtatcgaaggcctgattcgtcagaccggtgtgcat
gcgtgcgccaccatcatgggtagcgcacccatcaccgatacctcgccattgctggaacgt
accgatggcaccatcaccaccaccttcgaataccacacctgcgaaacgttgggtctggtc
aagatggacttccttggcctgtccaacttgacggtaatccacgacaccctgaagaatatc
gaagccaacggcaagcccgctatcgactacaccaagattccgcttgatgatgcggaaacc
tacaagctgatggcccgaggcgacaccttgggtgtgttccagcttgattccgacggtatg
cgttcgctgctgaaaacgctgaagcctgataatttcaacgatatttccgcacttatcgcc
ctgtaccgaccgggcccaatgagtatggattcgcacaccaactacgccaagcgtaagaac
ggtctgcagaagattacgcctattcaccccgaactcgaggagccactcaagcaggtgctc
gatgagacctatggtctgatcatctatcaggagcaggtgcagtccgccgcacgaatcctg
gcaggctattcgctgggcaaggcagacgtgctgcgtcgagccatgggtaagaagaagccc
gaagtgttggccaaggaaaaggtgccattctttgcaggcatgaaggagcacggatactcc
gaggaagcggcgaatgccgtgtgggatattcttgtgccgttctccggttacgctttcaat
aaagcgcactccgccgcatatggtctgatttcctattggaccgcttatctgaaaacccac
tatccggtcgagttcatggccgccctgttgcagggtgccgccaccaacaaagacaagacc
gcactgtatctgggcgaagcgcgccgcatgggtatccaggtgctgtccccggatgtcaat
gaatcggtttacgcgtactccgcagtaggagacgtcgtccgatttggccttggtgccatc
cgtaacgtgggcgataaggcagtggccgacatcattgccgagcgcgaaggaccgcgcggc
aagttcgtgaacttcatggacttcattcggcgtgtgcctctgaccgcgctcaaccggcga
ctggtcgaatcgctgatcaaggccggtgccttcgattcgattgacccgaaccgccgcgca
ttgttcactgtccacgaggccgccattgattcagtggtcagtctcaagcgtaagcaggcc
gaaggtcagttcgacctgttctccgatgcggacgatgggggagcggaagccatgggcgac
gcctctgtcaccgtgccggatatcgaggaatgggacaagaaaaccaagctcaactttgaa
cgagaaatgctgggtctctacgtttccgaccacccgctttccggtatgcagtcgatactg
gcctccctgcgtgaaatgtccattgcacatctgatcgatcgagccaagaccatgggtgag
gggcagcaggtcaccttggccggtctaatcaccggcgtggatcgccgtgtgtccaagaag
ggcaacccatgggccattgtgaccattgaagacatggaaagttctatccaatgcatgttc
ttcggtaaggtctacgaggccgccgccgccgagctggccgtggatgccatcgtgcagata
cgaggccaggtggaactgcgcgatgagaccgtttccatgcgtgccaccgagctgcaggtg
cccactctggaatccgaggacgagcgcccgctgaccatcacattgccgcacgcggctttg
gatcgtcaacatatgatgcaactcgggcaagtgctcaccaaccatcccggctattgcgag
gtgcacttggcggtgatggacgagaaaggcaatgcgcaggtactgacattcggcgatcgg
ttccgcgtcaaacgagatacttcactgtttgctgagatcaagattctcttcggtcccagc
tgtctccccgctgcctaa
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