Bifidobacterium breve UCC2003: Bbr_0540
Help
Entry
Bbr_0540 CDS
T02534
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase recQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bbru
Bifidobacterium breve UCC2003
Pathway
bbru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bbr_0540 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbru03019
]
Bbr_0540 (recQ)
03400 DNA repair and recombination proteins [BR:
bbru03400
]
Bbr_0540 (recQ)
Enzymes [BR:
bbru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Bbr_0540 (recQ)
Messenger RNA biogenesis [BR:
bbru03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Bbr_0540 (recQ)
DNA repair and recombination proteins [BR:
bbru03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Bbr_0540 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
HRDC
RQC
RecQ_Zn_bind
Rhodanese
DUF6587
ResIII
Motif
Other DBs
NCBI-ProteinID:
ABE95237
LinkDB
All DBs
Position
725884..727803
Genome browser
AA seq
639 aa
AA seq
DB search
MTAHEAALGALKQYFGYDSFRPGQQGIVDALLDGRDVLGVMPTGAGKSVCYQIPAALMPG
VTIVISPLISLMRDQVDALNDLGLPAAFVNTTQTPDEQAMVFAQAAAGQLKLLYVAPERL
ETGRFRDFAARTPISLIAVDEAHCVSQWGQDFRSSYLGIGDFIVGLPKRPPVGAFTATAT
ERVRRDIVGLLGLRNPAVTVTGFDRPNLYFDVVKLETKYKAAWVANYVAAHPDESGIIYC
ATRKTTEALAATLNQMGHAAVAYHGGMSSDAREAAQHDFITDKVPVVVATNAFGMGIDKS
DVRYVIHHNLPESIEAYYQEAGRAGRDGEPSRCTLLWNESDIVTRRRLLDSDYENERMTP
EDQEIVRQSKRRLLDGMVGYCRTADCLHRYMTRYFGQEITPTDAPSDTHEGKCGACSNCE
STFETIDVTSVAQAISRCVHDVNQRVGSGKIVKILRGSKAQDLAWLNPEQMPTFGMLKDV
NEARVRDVLSQMATDGYLFIAEGRMPIVMFGARAAETAASDFHYEIKRVERKSASVSSRH
GGVASESASASVAMESYIPDDDEEALFQKLRELRRTIAQEIGKPPYIVFSDKTLRDMARI
KPITNAQFLAVNGVGQHKLDLYGKRFMEAVASFNAGNAQ
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atgacggcacatgaggcggcgctgggggcgctcaagcaatacttcggttacgattcgttc
cggccaggccagcaaggcatcgtcgatgctttgctggatggccgggacgtactgggcgtt
atgcccaccggtgccggcaaatccgtgtgctaccagattcccgccgcgctcatgcccggt
gttaccatcgtgatctcgccgctgatctccctcatgcgtgatcaggtcgatgccctgaat
gatttgggcttgccggccgcatttgtcaacaccacccaaaccccggatgagcaggccatg
gtgttcgcccaggctgcggcgggtcagctcaaactgctgtacgtggctccggaacgattg
gaaaccggccgattccgcgacttcgccgcccgcacgccaatctccctgattgccgtggac
gaggcacactgcgtctcccaatgggggcaggatttccgttcgtcataccttggtattggc
gacttcattgtcggcctgcccaagcgcccgccggtcggcgcattcaccgccaccgccacc
gagcgcgtgcgccgcgacatcgtgggattgctgggtttgcggaatcctgccgtcaccgtc
accggattcgaccggccgaacctgtatttcgacgtggtcaagctggaaaccaaatacaag
gccgcgtgggtggcgaactatgtggctgcccacccggacgaatccggcatcatctactgt
gccacccgcaagaccaccgaggcgctcgcagctacgctgaaccagatggggcacgcggcg
gtcgcctaccatggcggcatgtcgtcggacgcgcgtgaagcggcgcagcacgacttcatc
accgacaaggtgccggtggtcgtggccaccaatgcgttcggcatgggtatcgacaagtcc
gatgtgcgatacgtcatccaccacaacttgccggaatccatcgaggcctattatcaggag
gccggccgcgccggacgtgacggcgagcccagccgctgcacgctgctgtggaacgaatcg
gatatcgtgacccggcgccgtctactcgacagcgattatgagaacgagcgcatgacccct
gaagatcaggaaatcgtgcggcagtccaaacgacgcctgctggatggcatggtgggctat
tgccgcaccgccgattgtctgcaccggtacatgacgcggtatttcggacaggaaatcacg
ccgacggatgcgccctcggatacgcatgagggcaagtgtggtgcctgctcgaactgcgaa
agtactttcgagaccatcgacgtcaccagcgttgcccaggcgatcagccggtgcgtgcat
gatgtgaatcagcgggtcggttccggcaaaatcgtcaagattctacgcggctccaaagcg
caggacctggcatggctcaatccggaacagatgcctacgtttggcatgctcaaggatgtg
aacgaggctcgcgtgcgcgatgtgctgagtcagatggccaccgatggctacctattcatc
gccgaagggcgtatgccgattgtcatgtttggcgcgcgtgctgctgaaaccgccgcgtcg
gatttccattatgaaatcaaacgtgtggagcgtaagtcggcttcggtaagtagtcgacat
gggggagtggccagcgaatcagccagtgcttccgttgcaatggaatcctatattcctgac
gatgacgaggaggcgctgttccagaagctgcgcgaactgcgtcgcaccatcgcccaggaa
atcggcaaaccgccgtacatcgtcttttccgacaagacattgcgagacatggcccgtatc
aagccgattaccaatgcgcagtttttggctgtcaacggtgtgggccagcacaagctcgac
ctttacggcaagcgctttatggaagccgtcgcctcgtttaacgccgggaatgcgcaataa
DBGET
integrated database retrieval system
