Bifidobacterium breve UCC2003: Bbr_0790
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Entry
Bbr_0790 CDS
T02534
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
bbru
Bifidobacterium breve UCC2003
Brite
KEGG Orthology (KO) [BR:
bbru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bbru03016
]
Bbr_0790
Enzymes [BR:
bbru01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Bbr_0790
Transfer RNA biogenesis [BR:
bbru03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Bbr_0790
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GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Motif
Other DBs
NCBI-ProteinID:
ABE95475
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Position
1025170..1026471
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AA seq
433 aa
AA seq
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MSDIHDTEPRLLKEPRGGVPDVTSTIEGYHHVCEALADASGSLAADAERASGFRYGHEDW
LIQCKREGAGIALLDPIALTQSGADWNEFNDAVGDATWILHDSLMDLPGFADLGLQPKAL
FDTEIAARLLGLHRFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDWRNYAALDVEVLIE
LENLMRRDLRAAGKDEWAEEEFTHALSEGLAPRKPHPVPWLRISRITQLSRDPQGLAIAK
SLWQERDKLARQHDIAPSLLLSDSSIIEAATRKPHNAAQFRALRSLNERVRIRTGTEQDK
MFERYAPIQRAVKPKVWKEAIDRAMALHPSQWPSMPAPAPDENGIVNAPRSMRLWQQRHP
DRYDRLQRVRRVITSIAEDTRTPAEMIIKPQILRNLCWVENPAEVDVEEFLIAQGARNWQ
VKLIAPSVSGVIM
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
ttgagtgacatccatgacaccgaaccacggttactgaaagagccgcgcgggggagtgccg
gatgttacctcgacgattgaaggctatcatcacgtctgcgaagcgttggctgatgcttct
ggctccttggccgccgatgccgaacgcgcatctggattccgttatggccacgaggattgg
ctgattcaatgcaaacgagaaggtgcgggcatcgcattactcgaccccatcgccttgacc
caatctggtgccgactggaatgaattcaatgatgccgtgggcgatgccacttggattttg
catgattctctgatggatttgccgggattcgctgatctgggacttcagccgaaggcgctg
ttcgacacggagatcgccgcgcgtctgctcggtttgcatcgattcggattagccgccgtc
accgaacattatcttggcatcactttggccaaggaacattctgcggctgactggtcctac
cgcccgctgccacgagactggcgcaactatgcggcgcttgacgtggaagtgctgatcgag
ctcgaaaacctgatgcgccgtgatctgagagccgccggcaaggacgagtgggctgaagag
gaatttacccatgcactgtccgaaggactcgcccctcgcaaaccccatccggttccgtgg
ctgcgcatttcccgcatcacccagctgagccgtgatccgcagggattggccatcgccaag
tctctgtggcaggagcgggacaaactggcccggcagcatgacattgcccccagcctgctg
ttgtctgattcctcgattatcgaggctgcgacgcgcaagccgcataatgccgcccagttt
cgggctctgcgctcgctcaatgagcgtgtgcgcattcgcaccggcaccgagcaagacaag
atgtttgaacgttatgccccaatccagcgtgccgtcaaacccaaggtttggaaagaggcc
attgatcgggccatggcgctgcacccctcccaatggccgagtatgccggcacccgcgccg
gacgagaacggcatagtgaatgcaccacgttcgatgcgactctggcagcaaaggcacccc
gaccgatatgaccgactgcaaagggtccgccgcgtgatcacttcgatagccgaagatacg
cgtacgccggccgagatgattatcaagccgcagattctgcgcaacctatgctgggtggag
aatccggccgaagtggacgtcgaggagttcctgatcgcgcagggcgcaagaaactggcag
gtgaaactcattgcaccgtccgtaagtggcgttattatgtag
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