Bifidobacterium breve UCC2003: Bbr_1171
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Entry
Bbr_1171 CDS
T02534
Symbol
hrdB
Name
(GenBank) RNA polymerase principal sigma factor hrdB
KO
K03086
RNA polymerase primary sigma factor
Organism
bbru
Bifidobacterium breve UCC2003
Brite
KEGG Orthology (KO) [BR:
bbru00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Bbr_1171 (hrdB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bbru03021
]
Bbr_1171 (hrdB)
Transcription machinery [BR:
bbru03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Bbr_1171 (hrdB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_20
Motif
Other DBs
NCBI-ProteinID:
ABE95849
LinkDB
All DBs
Position
complement(1462015..1463433)
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AA seq
472 aa
AA seq
DB search
MATKETTATKQTAESSEETETKKKASSTTARKTSAKKTKDTKGTTAAKTGEKTSRKTSAK
KVKKEEELPQNDISQSDDPEDLDVDNLDEDLDDVESEDVDDLEDADAESDDEDIDDEDDE
DEEDEGKAASKAPEQPKEKGAYVVSDTDDEEENIIPAGNPKRRVIAAGATADPVKDYLKQ
IGRVSLLNAEQEVDLSERIEAGLYAQHLLDTESEGMEFKRKRELKWAAADGKKAKDHLLE
ANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDWKKGFKFSTYATWWIRQAITR
AMADQARTIRVPVHMVEVINKLSRVQRQMLQDLGREPTPDELARELDMPVEKVQEVQKYG
REPISLHTPLGEDGDSEFGDLIEDTDAIAPSDAVAFSLLQEQFKQVLETLSPREAGVIKM
RYGLEDGQPKTLDDIGRVYGVTRERIRQIESKTMSKLRHPSRSQTLRDFLDQ
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
ttggccacgaaggaaacgacggcaaccaagcagacagccgagtccagcgaggagaccgag
accaagaagaaggccagctctaccaccgcgcgtaagacctccgccaagaagaccaaggac
acgaagggcaccacggctgccaagaccggtgagaagacttcacgtaagacttcggccaag
aaggtcaagaaagaggaggagcttcctcagaacgacatcagccaaagcgatgacccggaa
gatcttgacgtcgataaccttgatgaggatcttgacgacgtcgaatccgaggacgtcgat
gatcttgaagatgccgatgccgagtcggacgacgaagacattgacgatgaggatgacgaa
gacgaggaagacgaaggcaaggccgcatcgaaggctcctgagcagcccaaggaaaagggt
gcttatgtggtttccgacacggatgatgaagaagagaacatcatccccgccggcaatccg
aagcgtcgtgtgattgcggcaggcgccaccgccgacccggtcaaggactacctcaagcag
attggtcgcgtcagcctgttgaacgccgaacaggaagttgacctgtccgagcgcatcgag
gccggcctgtacgcccagcatctgctcgataccgaaagtgaaggcatggagttcaagcgc
aagcgtgaactcaagtgggccgccgccgacggcaaaaaggccaaggatcatctgctggag
gccaacctgcgactcgtggtctcgcttgccaagcgctataccggccgcggcatgctgttc
ctcgatttgattcaggaaggcaaccttggtctgattcgtgccgtcgagaagttcgattgg
aagaagggcttcaagttctccacctacgccacgtggtggattcgtcaggccattacccgt
gctatggccgatcaggcccgtaccattcgtgtgcccgtgcacatggtcgaagtgatcaac
aagctgagccgtgtgcagcgccagatgctgcaggatctgggccgtgagcctacgccggac
gagctggcccgtgagctggacatgccggtcgaaaaggtgcaggaagtgcagaagtacggc
cgcgagccgatttccctgcacaccccgctcggtgaggacggcgattccgagttcggcgat
ctcatcgaggataccgatgccattgctccgtccgatgcagtggcgttctccctgctgcag
gagcagttcaagcaggtgttggaaaccctgtctccgcgtgaggccggtgtgatcaagatg
cgttacggtttggaggacggccagccgaagaccttggacgatattggccgtgtatatggc
gtgacccgagagcgtatccgccagatcgaatccaagaccatgtccaagttgcgccacccg
tcccgttcgcagaccctgcgcgacttcctggatcaatga
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