Bifidobacterium breve 689b: B689b_0518
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Entry
B689b_0518 CDS
T03119
Name
(GenBank) ATP-dependent DNA helicase recQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bbrv
Bifidobacterium breve 689b
Pathway
bbrv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbrv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B689b_0518
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbrv03019
]
B689b_0518
03400 DNA repair and recombination proteins [BR:
bbrv03400
]
B689b_0518
Enzymes [BR:
bbrv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B689b_0518
Messenger RNA biogenesis [BR:
bbrv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B689b_0518
DNA repair and recombination proteins [BR:
bbrv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
B689b_0518
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
HRDC
RQC
RecQ_Zn_bind
DUF6587
Rhodanese
ResIII
Motif
Other DBs
NCBI-ProteinID:
AHJ22581
LinkDB
All DBs
Position
654533..656491
Genome browser
AA seq
652 aa
AA seq
DB search
MTCDRGNAVWLGSMTAHEAALGALKQYFGYDSFRPGQQGIVDALLDGRDVLGVMPTGAGK
SVCYQIPAALMPGVTIVISPLISLMRDQVDALNDLGLPAAFVNTTQTPDEQAVVFAQAAA
GQLKLLYVAPERLETGRFRDFAARTPISLIAVDEAHCVSQWGQDFRSSYLGIGDFIVGLP
KRPPVGAFTATATERVRRDIVGLLGLRNPAVTVTGFDRPNLYFDVVKLETKYKAAWVANY
VAAHPDESGIIYCATRKTTEALAATLNQMGHAAVAYHGGMSSDAREAAQHDFITDKVPVV
VATNAFGMGIDKSDVRYVIHHNLPESIEAYYQEAGRAGRDGEPSRCTLLWNESDIVTRRR
LLDSDYENERMTPEDQEIVRQSKRRLLDGMVGYCRTADCLHRYMTRYFGQEITPTDAPSD
THEDKCGACSNCESTFETIDVTSVAQAISRCVHDVNQRVGSGKIVKILRGSKAQDLAWLN
PEQMPTFGMLKDVNEARVRDVLSQMATDGYLFIAEGRMPIVMFGARAAETAAPDFHYEIK
RVERKSASVSSRHGGVASESASASAAMESYIPDDDEEALFQKLRELRRTIAQEIGKPPYI
VFSDKTLRDMARIKPITNAQFLAVNGVGQHKLDLYGKRFMEAVASFNAGNAQ
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgacttgtgaccgcggcaatgcggtatggttgggaagcatgacggcacatgaggcggcg
ctgggggcgctcaagcaatacttcggttacgattcgttccggccaggccagcaaggcatc
gtcgatgctttgctggatggccgggacgtactgggcgttatgcccaccggtgccggcaaa
tccgtgtgctaccagattcccgccgcgctgatgcccggtgttaccatcgtgatctcgccg
ctgatctccctcatgcgtgatcaggtcgatgccctgaatgatctgggcttgccggccgca
ttcgtcaacaccacccaaaccccggatgagcaggccgtggtgttcgcccaggctgcggcg
ggtcagctcaaactgctgtacgtggctccggaacgattggaaaccggccgattccgcgac
ttcgccgcccgcacgccaatctccctgattgccgtggacgaggcacactgcgtctcccaa
tgggggcaggatttccgttcgtcataccttggtattggcgacttcattgtcggcctgccc
aagcgcccgccggtcggcgcattcaccgccaccgccaccgagcgcgtgcgccgcgacatc
gtgggattgctgggtttgcggaatcctgccgtcaccgtcaccggattcgaccggccgaac
ctgtatttcgacgtggtcaagctggaaaccaaatacaaggccgcgtgggtggcgaactat
gtggctgcccacccggacgaatccggcatcatctactgtgccacccgcaagaccaccgag
gcgctcgcagctacgctgaaccagatggggcacgcggcggtcgcctaccatggcggcatg
tcgtcggacgcgcgtgaagcggcgcagcacgacttcatcaccgacaaggtgccggtggtc
gtggccaccaatgcgttcggcatgggtatcgacaagtccgatgtgcgatacgtcatccac
cacaacttgccggaatccatcgaggcctattatcaggaggccggccgcgccggacgtgac
ggcgagcccagccgctgcacgctgctgtggaacgaatcggatatcgtgacccggcgccgg
ctactcgacagcgattatgagaacgagcgcatgacccccgaagatcaggaaatcgtgcgg
cagtccaaacgacgcctgctggatggcatggtgggctattgccgcaccgccgattgtctg
caccggtacatgacgcggtatttcggacaggaaatcacgccgacggatgcgccctcggat
acgcatgaggacaagtgtggtgcctgctcgaactgcgaaagtactttcgagaccatcgac
gtcaccagcgttgcccaggcgatcagccggtgcgtgcatgatgtgaatcagcgggtcggt
tccggcaaaatcgtcaagattctacgcggctccaaagcgcaggacctggcatggctcaat
ccggaacagatgcctacgtttggcatgctcaaggatgtgaacgaggctcgcgtgcgcgat
gtgctgagtcagatggccaccgatggctacctattcatcgccgaagggcgtatgccgatt
gtcatgtttggcgcgcgtgctgctgaaaccgccgcgccggatttccattatgaaatcaaa
cgtgtggagcgtaagtcggcttcggtaagtagtcgacatgggggagtggccagcgaatca
gccagtgcttccgctgcaatggaatcctatattcctgacgatgacgaggaggcgctgttc
cagaagctgcgcgaactgcgtcgcaccatcgcccaggaaatcggcaaaccgccgtacatc
gtcttttccgacaagacattgcgagacatggcccgtatcaagccgattaccaatgcgcag
tttttggctgtcaacggtgtgggccagcacaagctcgacctttacggcaagcgctttatg
gaagccgtcgcctcgtttaacgccgggaatgcgcaataa
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