Bifidobacterium breve 689b: B689b_0895
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Entry
B689b_0895 CDS
T03119
Name
(GenBank) ATP-dependent DNA helicase pcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
bbrv
Bifidobacterium breve 689b
Pathway
bbrv03420
Nucleotide excision repair
bbrv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bbrv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B689b_0895
03430 Mismatch repair
B689b_0895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbrv03400
]
B689b_0895
Enzymes [BR:
bbrv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B689b_0895
DNA repair and recombination proteins [BR:
bbrv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
B689b_0895
MMR (mismatch excision repair)
Other MMR factors
B689b_0895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
AHJ22928
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All DBs
Position
1087012..1089687
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AA seq
891 aa
AA seq
DB search
MYDEPEVIARSAQELVGDLNPQQAEAVQYRGQALLIGAGAGSGKTRVLTRRIAWILSQFG
AWPSQILAITFTNKAAAEMRERLGSLIGPVAQRMWVSTFHSACVRILRRDGKSIGLKSGF
SIYDSADSERLVKIIATEFNLDIKRYTPRSILGHISDLKNNLTGWKENLAVHAPDFTPGQ
RGYQFGTVGDLEAIYAVIYAEYEHRLALANAVDFDDLIGRTVELLRTDPAVAEYYHHRFR
YILVDEYQDTNHAQYVLVRELAGVDTGEKAIPGAPNAGKSGPAWITVVGDSDQSIYAFRG
ADIRNIQDFEQDFPNAKTIMLEQNYRSTQTILDAANAVISNNEGRKPKKLWTALGKGEPI
VGYAADNAQQEAQWVATEIARLHAEEDIAYSDMAIMYRANAQSRSLEEALINAGLPYQLV
GGTKFYERREIKDALAYLQALVNPDDDVNLRRILNVPKRGLGDRAEGILLAYARERGTSF
FYALMHLDEIQDVPTRTATQLKAFRDLMGELSQFTRAHDAKPSEIVAEVLEKSGLRAELE
KSVDPQDASRLENLSQLQSTAAEFEQNTPDATLSAFLETTALVADSDQLPGEAEDSGKVT
LMTLHTAKGLEYPVVFLTGMEQGTFPHSRSMEDTTELQEERRLAYVGITRAKRRLYVTRA
AVRSQWGQAADMMPSQFLDEIPDSLIDWKRREAGVERMRANWESDGFADDYGGWDDDDFG
GTTFGGSSTFGSRGSGSSYGSRSHYGSSSYGSGSSYGSRSGGSSYGSRSSSSYGSRSRSG
SSYGSGSGSSYGSRSRSSSASGGTRGGKVTTRHTTPKSGSAGSSMPSSKLAKDNGLNISD
FAVGDMISHDQYGLGKVTDAQDKGRNSVITVDFGSAGVKRLMLRVAPIEKL
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
gtgtacgacgagccggaagtcatcgcccgcagcgcgcaggaactcgtaggcgacctgaac
ccgcagcaggccgaagccgtgcaataccgcggccaggcgctgctgatcggagccggcgcc
ggttccggcaaaacccgagtcctcacccgacgcatcgcatggatcctgagccagttcggc
gcatggcccagccagattctggccatcaccttcaccaacaaggccgccgccgagatgcgt
gaacgactcggctcgctgattggcccggtggcccagcgtatgtgggtctccaccttccac
tccgcctgcgtgcgcatcctgcgccgcgacggcaaatccatcggcctcaaatccggcttc
tccatctacgattccgccgactccgagcgactcgtcaaaatcatcgccaccgaattcaac
ctcgatatcaagcgctacaccccgcgttcgatcctcggccacatctccgacctgaaaaac
aacctgaccggctggaaggaaaacctcgccgtccatgcgcccgacttcacgcccggccag
cgcggctaccagttcggcacggtgggtgaccttgaagccatttacgcggtgatatacgcc
gaatacgagcacaggctcgctctggccaacgccgtcgacttcgatgatctgattgggcgc
acggtcgaactgctgcgcaccgacccggccgtcgccgagtactaccatcaccgtttccgc
tacattctggtcgacgagtatcaggacaccaaccacgcccagtatgtgctcgtacgcgag
ctggccggcgtggacacaggggagaaggccattccgggcgcgccgaacgcaggcaaatcc
ggccctgcttggatcaccgtcgtgggcgattccgaccagtccatctatgccttccgcggc
gccgacatccgcaacatccaggatttcgaacaggacttcccgaacgccaagaccatcatg
ctcgaacagaactatcgttcgacgcagaccattttggacgcggccaacgcggtgatcagc
aacaacgagggacgcaagcccaagaaactgtggacagcactcggcaaaggcgagccaatc
gtcggctacgcggcggataacgcccagcaggaggcccagtgggtggccaccgaaatcgcc
cgactgcacgccgaagaagatatcgcctactctgacatggcgattatgtatcgcgccaac
gcgcagtcccgctcgctcgaagaggcgttaatcaacgcagggctgccgtaccagctcgtc
ggcggcaccaagttctacgaacgccgtgaaatcaaggacgcgctggcctacctgcaggcg
ctggtcaacccggatgatgacgtgaacctgcgtcgaattttgaacgtgcccaagcgcggg
ctcggcgatcgtgccgagggcatcctgctcgcctatgcgcgcgaacgtggcaccagcttc
ttctatgcactcatgcatttggatgaaattcaggacgtgcccacacgtaccgccacgcag
ctcaaggccttccgtgatttgatgggtgagctctcgcaattcacgcgagcacatgacgcc
aagcccagcgagattgtggccgaagtgctggagaagtccggcttgcgtgcagagctggaa
aagtccgtggacccgcaggacgcctcccgtttggaaaacctctcccagctgcagtccacc
gcagccgagtttgagcagaacacgcccgacgccacgctatccgcattcctggagaccacc
gcgctcgtggccgattccgaccagctgcccggcgaggcggaggattccggcaaagtgacg
ctgatgaccttgcacacggccaagggcctcgaatacccggtggtgttcctgaccggcatg
gaacagggcacgttcccgcattcgcgttcgatggaggacaccaccgaactgcaggaggaa
cgccgacttgcctatgtgggtattacccgcgccaagcggcggctgtacgtcacgcgcgcg
gctgtacgctcccagtggggtcaggccgccgatatgatgcccagccagttccttgacgag
attccggattcgctgatcgactggaagcgtcgtgaggccggcgtggaacgcatgcgcgcc
aactgggaatccgatggattcgccgacgattacggcggctgggatgatgacgattttggc
ggtacgacgttcggtgggtcctcgacattcggctctcgcggttcgggttcgtcgtatggc
tcgagatctcattacggctcgtcaagctatggatctggctcgtcctatggctcccgttcg
ggcggttcatcgtatggctcacgttccagctcctcctacggttcccgctcgcgctcgggt
tcgtcctatggttcgggttccggctcttcatatggttctcgttcccgttccagttcggcg
tccggcggcactcgtggcggcaaggtcactacgcgccacaccacgccgaagtccggttcc
gccggatcttccatgccaagttccaagctcgctaaagataatggactgaatatctctgac
tttgctgtgggcgacatgatcagccacgaccagtacggtctcggcaaggtcaccgacgcg
caggacaagggccgcaattcggtcatcaccgtggacttcgggtcagccggcgtcaaacgc
ctcatgctccgcgtggcaccgatcgaaaagctgtga
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