Brettanomyces bruxellensis: BRETT_002055
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Entry
BRETT_002055 CDS
T07183
Symbol
LSM5
Name
(RefSeq) RNA-binding protein lsm5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
bbrx
Brettanomyces bruxellensis
Pathway
bbrx03018
RNA degradation
bbrx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bbrx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
BRETT_002055 (LSM5)
09123 Folding, sorting and degradation
03018 RNA degradation
BRETT_002055 (LSM5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbrx03019
]
BRETT_002055 (LSM5)
03041 Spliceosome [BR:
bbrx03041
]
BRETT_002055 (LSM5)
Messenger RNA biogenesis [BR:
bbrx03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
BRETT_002055 (LSM5)
mRNA degradation factors
5'-3' decay
Lsm complex
BRETT_002055 (LSM5)
Spliceosome [BR:
bbrx03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
BRETT_002055 (LSM5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
64573979
NCBI-ProteinID:
XP_041138384
UniProt:
A0A871RHJ2
LinkDB
All DBs
Position
9:complement(393171..393452)
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AA seq
93 aa
AA seq
DB search
MSAENKETQDTEVPQILPLELIDKSIGTKIWAIMSDFHEFVGTLEGFDDFVNIVLSDVTE
YDVSKKVVSKKSKMLLSSRNLAMLVPGGDGPDF
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atgtcggctgaaaacaaggaaacacaggacacggaagtgccacaaattctaccgttagaa
cttattgataagagcattggtacaaaaatatgggcaatcatgtctgattttcacgaattc
gtggggaccttagaaggattcgatgatttcgttaatatagtgttgagtgatgtgacagag
tatgacgtttcgaaaaaagtggtgtcaaaaaaatctaagatgcttctatcatcgaggaat
cttgcaatgcttgttccaggaggagacggaccggatttttag
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