Brettanomyces bruxellensis: BRETT_002406
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Entry
BRETT_002406 CDS
T07183
Symbol
CDC48
Name
(RefSeq) AAA ATPase cdc48
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
bbrx
Brettanomyces bruxellensis
Pathway
bbrx04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
bbrx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
BRETT_002406 (CDC48)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbrx03019
]
BRETT_002406 (CDC48)
03009 Ribosome biogenesis [BR:
bbrx03009
]
BRETT_002406 (CDC48)
04131 Membrane trafficking [BR:
bbrx04131
]
BRETT_002406 (CDC48)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
bbrx04147
]
BRETT_002406 (CDC48)
Messenger RNA biogenesis [BR:
bbrx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
BRETT_002406 (CDC48)
Ribosome biogenesis [BR:
bbrx03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
BRETT_002406 (CDC48)
Membrane trafficking [BR:
bbrx04131
]
SNARE
SNARE associated proteins
Others
BRETT_002406 (CDC48)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
BRETT_002406 (CDC48)
Exosome [BR:
bbrx04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
BRETT_002406 (CDC48)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
CDC48_2
AAA_2
RuvB_N
AAA_33
AAA_16
Vps4_C
AAA_14
AAA_5
AAA_22
TIP49
nSTAND3
RNA_helicase
ResIII
IstB_IS21
ABC_tran
AAA_25
AAA_28
AAA_17
PhoH
Mg_chelatase
KAP_NTPase
AAA_7
Molydop_binding
NPHP3_N
Parvo_NS1
Motif
Other DBs
NCBI-GeneID:
64574330
NCBI-ProteinID:
XP_041138727
UniProt:
A0A871RC77
LinkDB
All DBs
Position
9:join(1228654..1229392,1229410..1231214)
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AA seq
847 aa
AA seq
DB search
MVEDKKDKKPLLDASGAVVEPEDATATAILRRKKKPNSLVVDDSPNDDASVISMSSKTME
KLQLFRGDAVLIKGKKRKQTVLIAMADDDLDEGMCRMNRVSRNNVRVRLGDVITVHACAD
IKFATRISVLPIADTIEGLTGSLFDLYLKPYFVDAYRPVHKGDHFVVRGGMRQVEFKVVE
VEPEEFAIVSQDTIIHSEGEPISREEEENNLNEVGYDDIGGCRKQMAQIRELVELPLRHP
QLFKVIGDLDVRPTGHGKTLLARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEA
EKNAPAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNVVVIAATNRPNSI
DPALRRFGRFDREVDIGIPDATGRLDILRIHTKNMKLAGDVDLETIAQQTHGYVGADLAS
LCSEAAMQQIREKMDQIDFEEENIDTEVLDSLAVTMDDFKFALSNSNPSALRETVVESVN
VTWEDIGGLDGIKQELRETVEYPVMHPDQYTKFGLSPSKGVLFFGPPGTGKTLLAKAVAT
EVSANFISVKGPELLSMWYGESESNIRDIFDKARAAAPTVVFLDELDSIAKARGGDMGDA
GGASDRVVNQLLTEMDGMNSKKNVFIIGATNRPDQIDPAILRPGRLDQLIYVPLPDEDAR
LSILKAQLRKTPLEPGLDLGAIAKATSGFSGADLAYVVQRAAKFAIKESIEAQRRAEEAE
NAAEKARDAGVKQENGKNQSTDDEMVDIQQDQDQKQDPVPYITRHHFEQAMKTAKRSVTP
AQLRRYEAYAQQMQAARGQMSHFHFDSDGSGNTGSAGPADGSAAQTSADASGAAFGSTED
DDDDLYS
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atggttgaagataaaaaggacaagaagccactattggatgcatcgggggcagtagttgag
ccggaggatgcaacagcaacggcaattcttagaaggaagaagaagcctaactcgttggtg
gtggacgactcgccgaacgacgatgcatccgtgatttcgatgtcgtcgaagacgatggag
aagctccagttgtttcgaggagatgcggtgttgatcaagggcaaaaagaggaagcagact
gtgttgatcgcgatggcggacgatgacctagacgagggtatgtgccggatgaaccgggtg
tcgcggaacaacgtgagggttcgtcttggggacgtgatcacggtgcatgcgtgtgcggac
atcaagtttgcgacgaggatctctgttttgccgattgcagacacgatcgaggggctcacc
gggtcgctcttcgatttgtacttaaagccgtacttcgtggatgcgtaccggccggtgcac
aaaggggaccactttgtggttcgaggcggaatgaggcaggtggagttcaaagtggtggag
gtggagccggaggagtttgcgattgtgtcgcaggacacgatcatccactcggagggcgag
ccgatcagccgtgaggaggaagagaacaacttgaacgaggtcgggtacgacgacattggg
ggttgccggaagcagatggcacagatcagggagcttgtggagttgcccttgaggcacccg
cagttgttcaaggtgatcggggatcttgatgtacggcccaccgggcacggaaagacgttg
ttggcccgggcggtggcgaatgagaccggggcgttctttttcttgatcaatggaccggag
atcatgtcgaagatggccggagaatcggagtcgaacttgagaaaggcgttcgaggaggcg
gagaagaatgcgcctgcgataatctttatcgatgagatcgactcgatcgcaccaaagagg
gacaagacgaacggcgaagtggagagaagggttgtgtcgcagcttttgacgttgatggac
ggcatgaaggcgcggtcgaacgtcgtggtgatcgctgcaacgaaccggccgaactcgatc
gacccggcactccgtcgatttggtcgtttcgaccgcgaggtggacatcgggatcccggat
gcgacgggacgactcgacatcttgcggatccacacgaagaacatgaagttggcgggcgac
gtggatctcgagacgatcgcccagcagacccacgggtacgtgggagccgatttggcgtcg
ctctgctcggaggcagccatgcagcagatccgtgagaagatggaccagatcgatttcgag
gaggagaacatcgacacggaggttttggactcgttggccgtgacgatggacgacttcaag
ttcgcgttgtcgaattcgaacccgtccgctttgcgtgagaccgttgttgagagtgtgaat
gtcacctgggaggacatcggaggacttgatggcatcaagcaggagctccgggagaccgtc
gagtacccggtgatgcacccggaccagtacacgaagttcgggctttcgccgtcgaaaggt
gtgcttttcttcgggcctcctggaaccggtaaaaccttgcttgccaaggccgttgccaca
gaggtgtctgccaacttcatctctgtcaaaggtcccgagctcttgagtatgtggtacgga
gagtctgagtccaacatccgtgacatctttgataaggctcgtgctgcggctcccacggtg
gtgtttttggatgagttggattcgatcgccaaggccaggggtggcgatatgggcgatgct
ggtggggcatctgatcgtgtggtgaaccagcttttgaccgagatggacggcatgaactca
aaaaagaacgtgtttatcatcggtgccacgaaccggcccgatcagatcgacccggccatc
ctccgtccgggcagattggaccagttgatctacgttccgctccctgatgaggatgccagg
ctgtccattctgaaggcccagttgcggaagactcccttggagccgggactcgatcttgga
gccattgccaaggccaccagcggcttctccggtgccgatttggcctacgtggtccagcgg
gccgctaaattcgccataaaggagtccattgaggcccagaggcgggctgaggaggctgaa
aacgccgctgaaaaggctcgcgatgccggtgtcaagcaggagaacggcaagaaccagtcc
acggacgacgagatggtcgacattcagcaggaccaggaccagaaacaggacccggtgcct
tacatcaccaggcaccacttcgagcaggccatgaaaacggctaagcggtccgtcaccccg
gcccagttgaggcggtacgaggcgtatgcccagcagatgcaggctgcccggggccaaatg
tctcatttccacttcgattccgacggttctggcaacactggctccgcaggacctgccgac
ggctcagctgctcaaacttctgccgatgcctccggtgcggcctttggatccactgaggat
gacgatgacgacttgtatagttga
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