Brettanomyces bruxellensis: BRETT_003176
Help
Entry
BRETT_003176 CDS
T07183
Symbol
MTR4
Name
(RefSeq) ATP-dependent RNA helicase mtr4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
bbrx
Brettanomyces bruxellensis
Pathway
bbrx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbrx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BRETT_003176 (MTR4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbrx03019
]
BRETT_003176 (MTR4)
03041 Spliceosome [BR:
bbrx03041
]
BRETT_003176 (MTR4)
03009 Ribosome biogenesis [BR:
bbrx03009
]
BRETT_003176 (MTR4)
03016 Transfer RNA biogenesis [BR:
bbrx03016
]
BRETT_003176 (MTR4)
Enzymes [BR:
bbrx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BRETT_003176 (MTR4)
Messenger RNA biogenesis [BR:
bbrx03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
BRETT_003176 (MTR4)
Spliceosome [BR:
bbrx03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
BRETT_003176 (MTR4)
Complex C
U4/U6.U5 tri-SnRNP related factors
BRETT_003176 (MTR4)
Ribosome biogenesis [BR:
bbrx03009
]
Eukaryotic type
Pre-60S particles
Helicases
BRETT_003176 (MTR4)
Transfer RNA biogenesis [BR:
bbrx03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
BRETT_003176 (MTR4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
Motif
Other DBs
NCBI-GeneID:
64575100
NCBI-ProteinID:
XP_041139479
UniProt:
A0A871RCQ1
LinkDB
All DBs
Position
9:join(3167280..3167925,3167964..3170521)
Genome browser
AA seq
1067 aa
AA seq
DB search
MADLFDVFDEKPQNIETLKHENLIKTEKTKEDNTHKSKQEKRNFKDSTDSENSRKKQHLE
EEPANLSKKKEDVHPIVADDLEIEALREVNASDGLLGEVKRKTADNGAQTLDKGDSDTDK
KQKVKLKHQVRHQVAVPPGYKYIPIGQHKRKNDAKTYPFKLDPFQDTSISCIDRNESVLV
SAHTSAGKTVVAEYAIAQSLRDKQRVIYTAPIKALNVGLMTGDVTINPDAGCLVMTTEIL
RSMLYRGSEVMREVAWVIFDEVHYMRDKIRGVVWEETIIMLPDKVHYVFLSATIPNAMEF
AQWICKIHNQPCHIVYTDFRPTPLQHYLFPANGDGIYLVVDEKSNFREENFQRAMACITN
HEGDDPGSINSRKGGKSWKGGVHDSKSDIYKIVKMIWMKKYNPVIVFSFSKRDCEALAMK
MSKLDFNTEDEKKMLTKIFHNAIDLLSDEDKELPQIKNILPLLKRGIGIHHSGLLPILKE
IIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGTEFRWVSGGEYIQMSGRAG
RRGLDDRGIVIMMIDEKMEPQVAKGMLKGQADRLDSAFHLGYNMILNLLRVEGVSPEYMM
ENSFYQFQKTESVPKIQNQIQELKDEVSASHIDHYDDIKEYYDLKEQLTRYGEDERKIIT
HPSHILPHLKSGRIINVKVGNQKFGWAIVIDYHKRNRQRRFSENYSDHDSYLVDVFVNTM
FEDAPLKLIKPFSPLLPSGVRPATKKEKSTIAIIPITLNSIQEISSCRSIMPKDIKNSRS
QKTLDKALKEIVRRHPNGLPILNAIKKMHINDKDFLQLEKKISILKKKVSSTSIANSPDL
EELVEQYSKFVSMKNNIKILETKNKEVQSIIQLDDLKHRKRVLRRLGFISQDDVVQMKGR
VACEISTGDELLLTELIFNGIFNELKPEQCAALLSCFVFEERSNEVPRLTPELAEPLKTL
REMATKIAKVSRECKIDMIEKDYVESFRYELMEVVLSWCKGATFTQICKMTDVYEGSLIR
MFRRLEEMIKQLADAAKTIGNVALEQKMNQSYELVHRDIVSAGSLYL
NT seq
3204 nt
NT seq
+upstream
nt +downstream
nt
atggctgatttgtttgacgttttcgatgaaaagcctcaaaatattgagactttgaagcat
gaaaatttgattaagactgagaagacgaaggaggataatacacacaagagcaaacaggag
aaaagaaattttaaggactcaaccgattcagaaaactccaggaaaaaacagcatcttgag
gaagaacctgcaaatttaagcaagaaaaaagaggatgtacatccaatcgttgcagacgat
ttagaaatcgaagctttaagagaagtcaatgcttctgatggattactcggagaagttaaa
cggaaaaccgctgataatggtgctcagacacttgataaaggtgattctgatacagataag
aagcagaaggtgaagttaaaacatcaggtgagacatcaagtagctgttcccccaggttat
aagtatatcccgattggtcaacacaaaaggaagaacgatgcaaagacatatccttttaaa
cttgatcctttccaggatacatccatctcatgtattgatcgtaatgaatctgttttggtt
tcggcacatacttccgcaggtaagacagtggtggcagaatatgcaattgctcaatccctt
agagacaagcagagggtgatatatacggccccaattaaagctcttaatgttggtttaatg
acaggtgatgttacgataaatccggacgcgggttgtcttgtgatgacaactgaaattttg
aggtctatgctttataggggttccgaggttatgagagaagttgcatgggttatatttgac
gaagtgcattatatgcgcgataaaattagaggtgtggtttgggaagaaactatcattatg
ctaccggataaggtccattatgtgtttttatcagcaactattccaaatgcaatggaattt
gcccagtggatttgtaagattcataatcaaccctgtcatattgtttatacagatttcaga
ccaactccattacaacactatttgtttccggcaaatggcgatggcatctacttggttgtc
gacgaaaaaagcaatttcagggaagagaatttccagagagccatggcatgcattacaaat
catgaaggtgatgaccctggttctataaattcacgaaagggtggcaaatcttggaaggga
ggtgtacatgatagcaaatctgatatttataaaatcgtcaagatgatttggatgaaaaaa
tacaatccagtaatagttttttcgttttccaagagggattgcgaggcactagcaatgaag
atgtcgaaattagatttcaataccgaagatgaaaagaaaatgttaacgaaaatttttcat
aacgccatcgatttgctttcggatgaggataaagagcttccccaaattaagaatattctt
cccttgttaaaaagaggtataggcattcatcattctggtttgctaccaatattgaaggaa
atcatagaaattttattccaagaaggattcttgaaggtactttttgctacagagaccttt
tctattggattgaatatgcctgctaaaactgtcgtgtttacctcagttcggaaatgggat
ggtactgaattcagatgggtttctggtggtgagtatattcaaatgtcaggtcgtgccggt
agaagaggattggacgatcgaggaatcgttataatgatgattgacgagaagatggaacct
caggtggcgaaaggtatgcttaaaggtcaggcagatcgtcttgattccgcatttcatttg
ggatacaacatgattttgaatcttcttagagttgaaggtgtctcaccagagtacatgatg
gagaattccttttatcaattccagaaaacagaatctgttcctaaaattcagaatcaaata
caggaactaaaagacgaagtttctgcatcacatatagatcattatgacgatattaaggag
tactatgatttaaaagagcagcttactagatacggtgaagatgaacgcaaaataattact
catccttcgcatatcttaccacatttgaagagtggaaggattattaatgtgaaggtggga
aatcagaagtttggttgggctatagttattgactatcataaacgtaatcgtcagagacgt
ttttctgagaattatagcgaccatgattcatacttggtggatgtgtttgtcaataccatg
tttgaggatgctccattaaaattgattaaaccttttagcccattactgccatctggtgtt
cggcctgctacaaagaaggagaaatcaaccatagcaataattccaatcacgctaaattca
attcaggaaattagtagttgcaggtctattatgcccaaggacattaaaaattctcgttct
caaaagacattggacaaagccttaaaagaaattgtcagaagacatccaaatggtctacct
attctcaatgctatcaaaaagatgcatattaatgataaggatttcctgcagttagaaaaa
aagatttcaattttgaaaaaaaaggtttcaagcacatccatcgctaattccccagatctt
gaagaattagtcgagcagtactccaagtttgtgagtatgaaaaataacataaagattctt
gaaacaaagaacaaggaagttcaatccattattcagcttgatgatttaaaacatcgtaaa
agagttttaaggagacttggctttatttcacaagatgacgttgttcaaatgaaaggcagg
gttgcttgtgagattagtacaggggacgaattgttactcactgaattaatcttcaatgga
atctttaacgaacttaaacctgagcaatgtgctgcactactttcatgctttgtttttgaa
gaaagatcgaacgaggttccacggcttactccagagcttgcagaaccgttgaagacacta
agagaaatggcaacaaaaatagccaaggtgtctcgtgagtgtaagattgacatgatcgag
aaggattatgttgaatccttcagatacgagcttatggaggttgtattatcgtggtgtaag
ggtgcaacatttactcaaatttgtaagatgaccgatgtatacgagggttctttgatcaga
atgttcagaaggctagaggagatgataaagcagttagctgacgctgcaaagacaatcgga
aatgttgcattggagcagaaaatgaaccaaagctatgagcttgttcatagggacatagtt
tctgcaggatcattatatctctga
DBGET
integrated database retrieval system
