Brettanomyces bruxellensis: BRETT_003614
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Entry
BRETT_003614 CDS
T07183
Name
(RefSeq) uncharacterized protein
KO
K18748
protein SSD1
Organism
bbrx
Brettanomyces bruxellensis
Brite
KEGG Orthology (KO) [BR:
bbrx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbrx03019
]
BRETT_003614
Messenger RNA biogenesis [BR:
bbrx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
BRETT_003614
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Dis3l2_C_term
OB_Dis3
CSD2
Rrp44_CSD1
Rrp44_S1
Motif
Other DBs
NCBI-GeneID:
64575537
NCBI-ProteinID:
XP_041135960
UniProt:
A0A871QZU3
LinkDB
All DBs
Position
6:complement(join(385506..389169,389201..389303,389391..389583))
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AA seq
1319 aa
AA seq
DB search
MDSSSHSSFFGFNNQPQGDLPSKHDGSSANGQQNEPTTVQTIGDKPRTIHVAHRRSPSEL
TTLMLEQLNLQRQLEIVQQQQQQILQQQQQLSQQAGMGGNSFEGNSRNALDGNSRNTLGL
QGTASGTLGLQGLTLTSASNASYLSGAHRRSSSSTALPSGQEFTFGNHLHKRTQSSASYR
GSPEVLEEGRLQLSGHARSHSRSQSQSPSFHSFKSPQFPAGMGHARRHSLGITEARRAAA
EAQAQRVHSPSKLGRRAGFGLVSPLSPPSLTVTPAQNSTQGLAPPPPGLSAPPGLNESQS
FKFPAASSSSPQRGFQFPASQPGSSGVSALGPPQPSFAEQSGGYSGHRRLGSASSMNSAS
GFSLGHHRKQGSYGGSASSITQFQNGQRKSLFAPYLPQNSLPELIGEGRLVTGTLRVNKK
NRSDAYVSTNGLLDADIFICGSKDRNRALEGDLVAVELLVVDEVWTSKREKEEKKRIKDY
KEWAEGNRKKGAGSNPALPITDSHNDATESEKLHSHDSTGQPLNRKGSLKQRPTQKKNDD
VEVEGQSLLLAEEEEISDVQKPLYAGHIVAVIDRIPGQLFSGTLGLLRPSQASKENKNGK
YAKRNGGKGGRPKIIWFKPTDKKVPLIAIPTEQAPKDFVENHETYADQIFVASIKRWPIT
SLHPFGTLVSLLGPIDDPQVEVTSILRDNNFQGNEYPDRAVDRCLSELPRVEDGLSGRRD
LLSEYVLAFSQNGVVSEAAMHVKVARNNRIELGVHIADVTYFVGRNSGLDKRARKRSHGV
ALPQKTVGLFPDDVSQAFSFDANKTSLALSVVFEISSATFEIQDVWMGQTVVKPAQKVSY
EEMDEILGGEKRAEGEGRQSGKKEDGQLSGNGGDSQSSGTNNAQQPNKNPPSAAAGYVAT
LQLISDRLRKKRLGNPGLNADVSTPLLDRLDDESVRPSLNIYTEDKASEVLAEIFHAVNA
AVAQKIHSGLGSRALLRKYPMPTVSKFEAHLAKIERLGVKLDTTNSVTFQNSLLTIQDPL
KRSAVETILAKCMPKGRYVVAGRSDQNLGHFLFNSPTYTHFTSPLRRYADLVVHRQLKSV
VCANTNPDATSYAESIDSLKVTCDYCNFKKDCARAAQEQAIHLLLCQTVNDMGRETGQIL
CTGVVLQVYESSFDVYLPEFGIEKRVHGDQLPLRRAEFDKTQRMLELYWEPGVDSATYVP
EDENNALSYRASIKNKYRAPAQAAAKHQAETNGQLLSAAMLQRLQTFHQHAPSLFLAPGE
GSAKGSLAAYMKLCVTKMDGDEHIQQIKVMQRIPVLLRAEIGMALPCLTVRTLNPFVDE
NT seq
3960 nt
NT seq
+upstream
nt +downstream
nt
atggattcgtcgtcccacagttcattctttgggttcaacaatcagccacagggggatcta
ccatcgaagcatgatggatcttccgcgaatgggcagcagaatgagccgaccacagttcag
acgataggtgacaagccaaggacaattcacgtggcacaccggcgttcgccaagtgaacta
acaacattaatgctggagcagcttaatcttcagagacagctcgagatagtgcagcagcag
caacagcagattctacagcagcagcagcagctttcgcagcaggcaggcatggggggaaat
tcattcgagggaaattcgagaaatgcacttgatggaaactcaagaaacactcttggcctc
cagggaacggcatcaggcactcttggcctgcaagggctcacgcttacgtcagcatcaaac
gcctcatatctctctggagcccacagacggtcttcaagctccacagccttgccgtctggc
caggaattcacgtttggcaaccatttgcacaagcggacccagtcgtcggcctcgtaccgc
gggtcaccggaggtcttagaggaggggagattacaactttccggccacgcgagatcgcac
tctcggtcgcagtcacagtctccttctttccattcattcaagtccccacagtttccggct
ggaatggggcatgcccggcggcattcgttgggcattacggaggcccggagagcggcagca
gaagcccaggcacagagagtgcattctccatcgaaactgggccggcgggcgggctttggg
ctcgtttctccactttctccaccatctttaactgttaccccggctcaaaactctactcag
ggtcttgcacctcctcctccaggcctttcagcaccgcctggcctgaatgaaagccagtct
ttcaagtttccggcggcatcttcgtcgtctccgcagcgtggattccagtttccagcgtcc
cagcccggttccagcggagtctcggctcttggcccaccacagccgtcgtttgccgagcaa
tctggcggttattctggccacaggaggcttggatcagcttccagcatgaattccgcctct
ggattcagtctgggccaccacagaaagcagggatcgtatggagggtctgcgtcatccatc
acacagttccaaaacgggcagagaaagtcgctgtttgccccatatttgccgcaaaactcg
cttcctgagctcattggtgagggaagactcgtgacgggcactttaagggtgaataagaag
aaccggagtgatgcttacgtgtctacaaacgggcttctagacgcggatatcttcatctgc
gggtctaaggaccgtaacagggcgcttgaaggtgatctggttgcagttgagcttcttgtg
gtggacgaggtgtggacgtcaaagcgtgagaaggaggaaaaaaagcgaatcaaggactac
aaggagtgggccgagggaaaccggaagaagggcgcgggttcgaacccggccctgcccatc
acagactcccacaatgatgcaaccgagagcgagaagttgcacagccatgattcaaccggc
cagcctttgaaccggaagggatctctaaagcagagacctacgcaaaagaaaaacgacgat
gtcgaggtggagggccagtcgcttttgctggctgaggaggaggaaatcagcgatgtgcaa
aagccgttgtatgcagggcacattgtggcagtgattgatcgaattccaggtcagctcttc
tctggcactttggggcttcttcggccatcccaagcttccaaggagaataaaaacggcaag
tacgccaagagaaacggcggcaaggggggccggccgaaaatcatctggtttaagcccaca
gacaagaaggtgcctctcattgcgatcccaactgagcaggctccaaaagactttgtggaa
aaccatgaaacatacgcggaccagatctttgtcgcctctattaagcggtggccaatcaca
tccttgcatccattcggcacactagtgagtcttttgggcccaatcgacgacccacaggtc
gaagtcacaagcattttgcgcgacaacaatttccagggaaacgagtacccggacagagct
gtcgacagatgcctatctgagcttccccgggtcgaagacgggctttccggtcgcagggac
ttgctttccgagtatgttcttgcctttagccagaatggtgtggtttctgaagctgccatg
cacgtcaaggtggctcggaacaaccgtattgagctcggtgtgcacattgcagatgtgaca
tactttgttggccggaactccggcctggacaagcgggcaagaaagagatctcacggtgtt
gcacttcctcaaaaaacagttggtcttttccccgacgatgtttctcaggccttctcgttt
gacgccaacaagaccagtcttgccttgagtgttgtgttcgagatcagctctgccaccttt
gagatccaggatgtttggatgggccagactgtcgtgaagcccgcccaaaaagtgagctac
gaggagatggacgagattttgggaggtgagaagagggcagaaggtgagggtcgacaatcc
ggcaagaaagaggatggccaactatccggcaatggtggagatagccagtcatcaggcacc
aacaacgcccaacaaccaaacaagaatcctccatctgctgccgcaggttatgttgccact
ctccaactcatctcggacaggcttcgcaaaaagagactcggcaaccctggccttaatgct
gacgtgtccacacctcttcttgacaggttggatgacgaaagcgttcgtccttctctcaac
atatacacggaggataaggcgagtgaagttctagcagagatcttccatgcagtcaatgct
gcagtagctcaaaagattcattctgggctcggatcgcgagccttactgcgcaaataccct
atgccaacagtctcgaagttcgaggctcacttggcgaaaattgagcgtctgggtgtgaaa
cttgataccacgaactcggtcacattccagaactcattgctcactatccaggatcccctc
aagcggtctgctgtggaaactattcttgccaaatgcatgcctaagggccggtatgttgtt
gctggtagaagtgaccagaacttgggccacttcttgttcaacagcccaacttacactcac
ttcacgtctccattacgcaggtatgcggacctcgtcgtccacagacagttgaagtccgtc
gtttgtgcaaacaccaaccctgatgctacttcctatgccgagtccatcgactcactgaag
gtcacctgtgactactgcaacttcaaaaaagactgtgcccgggccgcacaggagcaggcc
atccatcttttgctctgccagactgttaatgacatgggccgggaaactggccagatcttg
tgcacgggtgttgttttgcaggtctacgagtcctcgtttgacgtttatcttccagagttt
ggcatcgagaaacgtgtacacggagatcagttacctctccggcgggccgagtttgacaag
acccagagaatgcttgaattgtactgggagcctggcgttgattcggctacgtacgttcct
gaggacgaaaataatgctctttcgtacagggcatcgatcaaaaataagtacagggctcct
gctcaggctgctgccaagcatcaggcggagacaaatggtcagttgctaagtgccgcaatg
cttcagagactccaaactttccaccaacatgcaccttcgttgttccttgctccaggagaa
ggaagtgccaaaggttctttggctgcttacatgaagctgtgtgttacgaagatggacgga
gacgagcatatccagcagataaaggttatgcaaaggatccctgttcttttgcgtgcggaa
ataggtatggctttaccatgcttgaccgtcaggacgctcaatccgtttgtggatgagtag
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