Brettanomyces bruxellensis: BRETT_004132
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Entry
BRETT_004132 CDS
T07183
Name
(RefSeq) uncharacterized protein
KO
K07573
exosome complex component CSL4
Organism
bbrx
Brettanomyces bruxellensis
Pathway
bbrx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbrx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BRETT_004132
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbrx03019
]
BRETT_004132
Messenger RNA biogenesis [BR:
bbrx03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
BRETT_004132
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
BRETT_004132
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
S1_RRP4
CSL4_N
Motif
Other DBs
NCBI-GeneID:
64576055
NCBI-ProteinID:
XP_041135404
UniProt:
A0A871R8H4
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Position
5:247506..248285
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AA seq
259 aa
AA seq
DB search
MSQPQAVLPGQPIVPIISAKKKAKYLAGRNCRIENITFNGSGVPSIVSSVVGKTSVTKKE
PLETSKESDKSDSYDEYVVNVFSKHDPEYVLPEDGTSEFNYVPTLTSSTPKLNDLVLARV
MKVSMDRVKVEIISIDADSEGSHVNAKELMLANFAANENNERFKGIIRSVDIRSTERDKV
KTWQCFQPGDIIRAQVISLGDGINYYLSTAKNNLGVVLARPSGENTFAESGKLLYALDWQ
TMIVPETGDLEQRKCARPF
NT seq
780 nt
NT seq
+upstream
nt +downstream
nt
atgtcccagccacaggcagtgctaccgggccaacccatagttcccattatttcggccaaa
aagaaggccaaatatcttgctggcagaaactgccgcatagaaaacataacattcaatgga
tctggtgttccttccattgtatcctcggtggttggaaaaacgagtgtcactaaaaaagag
cctttagagacatctaaagaatcggataagagtgatagctacgatgaatacgttgtgaat
gttttctcaaagcacgatccagagtatgttttgccagaagatggaacctcggagttcaac
tacgtccctactttaacctcaagcacaccaaagctaaacgacttggttttggcaagggtc
atgaaagtttcaatggatagagtgaaagtggagatcattagcatagatgctgattccgag
ggttcgcacgttaacgcgaaggagctcatgcttgccaattttgccgcaaacgaaaataat
gaacgcttcaaaggcattatacgatcggtcgatataaggtccacagaaagagacaaggtt
aagacatggcagtgcttccagccgggagatatcatccgtgcacaggtgatctctctagga
gacgggataaactactacttgagtacggctaagaacaacttgggggtagtgttggcaaga
ccttcaggtgagaatacttttgctgagtccggaaagttgctctatgcattggactggcaa
acaatgatagttccagaaacgggcgatcttgaacagaggaaatgtgcaagaccattttga
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