Brettanomyces bruxellensis: BRETT_004438
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Entry
BRETT_004438 CDS
T07183
Symbol
DED1
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
bbrx
Brettanomyces bruxellensis
Brite
KEGG Orthology (KO) [BR:
bbrx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbrx03019
]
BRETT_004438 (DED1)
03041 Spliceosome [BR:
bbrx03041
]
BRETT_004438 (DED1)
03036 Chromosome and associated proteins [BR:
bbrx03036
]
BRETT_004438 (DED1)
Enzymes [BR:
bbrx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BRETT_004438 (DED1)
Messenger RNA biogenesis [BR:
bbrx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
BRETT_004438 (DED1)
mRNA cycle factors
Common to processing body (P body) and stress granule
BRETT_004438 (DED1)
Spliceosome [BR:
bbrx03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
BRETT_004438 (DED1)
Chromosome and associated proteins [BR:
bbrx03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
BRETT_004438 (DED1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
64576361
NCBI-ProteinID:
XP_041135710
UniProt:
A0A871QZE2
LinkDB
All DBs
Position
5:complement(940979..942883)
Genome browser
AA seq
634 aa
AA seq
DB search
MAYVPPHRSRSDRGDSEGGNSEGGNSFGHEGGYQRGGYGSRGGYGNSYGSNYRGGYGSRG
GYGRGRGGYGRGRGGYNRRDNEYSSRGSYGRDKCRGTFVDGAQKPGAKDKKVELELFGDP
EKEEKSAGGINFDNYDDIPVEVSGEDAPEPIDKFTCPPIEELLMENIELSRFTKPTPVQK
YSIPIVGAGRDLMACAQTGSGKTGGFLFPVLSSLFKNGPTPVESDGNIFSKRKVHPMALV
LAPTRELAIQNFEEAKKFSYRSWVRPCVVYGGSDFHAQVRNMSRGCDLIVATPGRLNDML
ERGCVSLSHIKFLVLDEADRMLDMGFEPQIRNIVEGCDMPGTTERQTLMFSATFPREIQA
MARDFLNNYIFLSVGKVGSTSENITQRIMYVEDEDKKSSLLDILSSTDDTLTTGLTLIFV
ETKRMADILSDFLITQNFPATSIHGDRTQSEREHALELFKSGRAPILVATAVAARGLDIP
NVTHVINYDLPGDIDDYVHRIGRTGRAGNTGIATAFFNRGNRNVAKELVQLLTDSKQEIP
DFLKNISREGSGRGRGRSRNAPYRDYRRSNGGGYRGGNSYGGDYGGYGNNSGFGGNSGNS
GYGGSRYGNGGNGGFGGNKFSSSSSSSNSNSQWW
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atggcatacgttccaccacacagatctagatcggacagaggcgattccgaaggtggcaat
tccgaaggtggcaattccttcggtcacgaaggcggctatcagagaggaggctacggaagc
cgtggaggctatggaaacagctatggcagcaactatcgaggtggatatggcagccgtggc
ggatatggacgtggccggggaggatatggccgtggaagaggcggatacaatagaagggac
aacgaatacagcagcaggggaagttacggaagggacaagtgcagaggaacattcgttgat
ggagcccagaagccaggtgcaaaggataagaaagttgaactcgagctctttggtgatccg
gagaaggaggaaaagagtgccgggggtatcaacttcgacaactacgacgatatcccggtc
gaggtttccggagaagacgccccagagccaattgacaagttcacgtgccctccaattgaa
gagttgctcatggaaaacatcgagctttcgcgtttcaccaaaccaactccagtccagaag
tactccattccaatcgttggagccggaagagacctgatggcttgtgcccagacgggttcc
ggtaagacgggtggattcttgttcccagttctttcgtcgttattcaagaatggccccacc
ccagtcgagagtgatggcaacatcttctcgaagaggaaggtgcatccaatggcccttgtt
ttggccccaaccagagagttggccatccagaactttgaagaagccaaaaagttttcgtac
cggtcctgggttcgtccttgcgtcgtttacggtggctcggacttccatgcacaggttaga
aacatgtctagaggctgcgatttgattgttgccactcccggcagattgaacgacatgctc
gagagaggatgcgtgtccttaagccacatcaagttcttggtgttggacgaggcagacaga
atgttggatatgggtttcgagccccagatcaggaacattgtcgaaggctgcgacatgccc
ggcaccaccgagagacagacgttgatgttctcggccaccttcccgagggagatccaggcg
atggccagagacttcttgaacaactacatcttcctgtctgtgggtaaggttggatccaca
tcggagaacatcacgcagagaatcatgtacgttgaggatgaggacaagaagtccagcttg
ctcgatatattgtcgtcgaccgacgacacgctcaccaccgggttgacgttgattttcgtc
gagaccaagagaatggccgatatattgtcggacttcttgatcacgcagaacttccctgca
acatccattcacggtgacaggactcagagcgagagagagcatgccttggagctctttaag
agcggaagagcccctattcttgtggccaccgccgtcgctgcaagaggtttggatattcca
aacgtcacccatgtcatcaactacgatcttccaggagatatcgatgactacgtccaccga
atcggtaggactggtagagccggtaacactggtattgccactgccttcttcaacagaggc
aaccggaacgttgccaaggagttggtgcagctcttgactgactccaagcaggagatccca
gacttcctgaagaacatctccagagaaggctccggcaggggcaggggcagaagtagaaat
gctccttacagggattacagaagaagcaacggtggtggttacagaggaggaaacagttac
ggcggtgactacggcggatacggtaacaactccggcttcggtggcaactcgggcaactct
ggatacggaggaagcagatacggaaatggtggaaatggtggatttggaggcaacaagttt
tcctcatcctcttcatcttccaactccaactcccagtggtggtga
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