Brettanomyces bruxellensis: BRETT_004513
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Entry
BRETT_004513 CDS
T07183
Symbol
SUB2
Name
(RefSeq) Suppressor of the cold-sensitive snRNP biogenesis mutant brr1-1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
bbrx
Brettanomyces bruxellensis
Pathway
bbrx03013
Nucleocytoplasmic transport
bbrx03015
mRNA surveillance pathway
bbrx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bbrx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
BRETT_004513 (SUB2)
09122 Translation
03013 Nucleocytoplasmic transport
BRETT_004513 (SUB2)
03015 mRNA surveillance pathway
BRETT_004513 (SUB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbrx03019
]
BRETT_004513 (SUB2)
03041 Spliceosome [BR:
bbrx03041
]
BRETT_004513 (SUB2)
Enzymes [BR:
bbrx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BRETT_004513 (SUB2)
Messenger RNA biogenesis [BR:
bbrx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
BRETT_004513 (SUB2)
Spliceosome [BR:
bbrx03041
]
Complex C
Other components
EJC/TREX
BRETT_004513 (SUB2)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
BRETT_004513 (SUB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Dark_CARD
Motif
Other DBs
NCBI-GeneID:
64576436
NCBI-ProteinID:
XP_041135785
UniProt:
A0A7D9GZ33
LinkDB
All DBs
Position
5:join(1125777..1125999,1126551..1127629)
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AA seq
433 aa
AA seq
DB search
MSAQGEEELLDYSDSEEINVAPTTTQTSDETKKEGETDKKGSYVGVHTTGFRDFLLKPEL
LRAIADCGFEHPSEVQQACIPQAILGNDVLCQAKSGLGKTAVFVLSTLQQLDPTPGEIST
VVICHTRELAYQIRNEYVRFSKYMPDVRTAVFYGGISINKDEELLKNKDTCPHIVVGTPG
RLTALVREKAIRLNNVKNFVIDECDRVLEQISMRRDVQDIFRATPYQKQVMMFSATLPTE
MRPVCKKFMKNPLEIYVDDEKKLTLHGLQQYYIKLPEEKKNVKLAELLDSLEFNQVIIFV
KSTRRADALNKLLCDSNFPSICVHSGMPQEERIARYKSFKEYNKRICVSTDVFGRGIDIE
RINVAINYDMPKEADQYLHRVGRAGRFGTKGLSVSFVSSKDDEELLDQIQQRFEVKMQEF
PADGIDPSTYMNT
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgtcagctcaaggtgaagaagagttattggattactctgattctgaggagattaacgtg
gctccaaccaccacccagacctccgatgaaactaaaaaggagggagaaaccgacaagaaa
ggttcctatgttggtgttcacaccaccggtttcagggacttcttgttgaagccggagttg
cttagagcaattgcagactgtggtttcgaacatccttcggaagtccaacaggcatgcatt
ccacaagcaattttgggaaatgatgtgttgtgccaggccaaatccggtttgggtaagacg
gctgttttcgttctttcgacattgcagcagttggacccaacaccaggtgaaatttcgacc
gttgttatctgccacacaagagagttggcataccagattagaaatgagtatgttagattc
tctaaatatatgccagacgttaggaccgctgtgttctacggtggtatctctattaataag
gatgaagagcttttgaaaaacaaagatacttgcccacatattgttgttggaactcctggt
agattgaccgccttggttagagagaaggcaattagacttaacaacgtcaagaactttgtc
atcgatgaatgtgatagagttttggagcagatctctatgagaagagatgtccaggatatt
ttcagagctacaccttatcaaaagcaagtcatgatgttctcggccaccttaccaactgaa
atgagaccggtgtgtaaaaagttcatgaagaacccacttgagatttacgttgatgacgag
aagaagttgactttgcacggtttgcagcagtattacatcaagctgcctgaagagaagaag
aatgtaaagttggcagagctgttggattctttggaatttaaccaagtgattattttcgtt
aaatccaccaggagagcagatgctttgaacaagcttctatgcgattctaacttcccatca
atctgcgtgcattcaggtatgcctcaagaggagagaattgccagatacaagtctttcaag
gaatacaacaagcgtatctgtgtttcgaccgatgtctttggcagaggtattgatattgaa
agaattaatgtcgctatcaattacgatatgccaaaggaggccgaccagtacttgcacagg
gttggtagagctggtagatttggtaccaagggattgtctgtctcgtttgtttcaagtaag
gatgatgaagaattgttggaccagatccagcaaagatttgaggttaaaatgcaggaattc
cctgcagacggaattgacccatccacctacatgaacacttga
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