Brettanomyces bruxellensis: BRETT_004652
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Entry
BRETT_004652 CDS
T07183
Symbol
RAD3
Name
(RefSeq) TFIIH/NER complex ATP-dependent 5'-3' DNA helicase subunit
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
bbrx
Brettanomyces bruxellensis
Pathway
bbrx03022
Basal transcription factors
bbrx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bbrx00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
BRETT_004652 (RAD3)
09124 Replication and repair
03420 Nucleotide excision repair
BRETT_004652 (RAD3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bbrx03021
]
BRETT_004652 (RAD3)
03036 Chromosome and associated proteins [BR:
bbrx03036
]
BRETT_004652 (RAD3)
03400 DNA repair and recombination proteins [BR:
bbrx03400
]
BRETT_004652 (RAD3)
Enzymes [BR:
bbrx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
BRETT_004652 (RAD3)
Transcription machinery [BR:
bbrx03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
BRETT_004652 (RAD3)
Chromosome and associated proteins [BR:
bbrx03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
BRETT_004652 (RAD3)
DNA repair and recombination proteins [BR:
bbrx03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
BRETT_004652 (RAD3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
ResIII
DEAD
Motif
Other DBs
NCBI-GeneID:
64576575
NCBI-ProteinID:
XP_041136497
UniProt:
A0A871R5D0
LinkDB
All DBs
Position
7:complement(join(294658..297064,297144..297148))
Genome browser
AA seq
803 aa
AA seq
DB search
MKFFIDDLPILFPYPKIYPEQYAYMCDVKKCIDVGGNGVLEMPSGTGKTIALLALSVAYQ
MYYPEHRKIIYCSRTMSEIEKALIELEKLMDYRAKELGHVENFRGLGLTSRKNLCLHPVV
GKEKKGTVVDEMCRRLTNGQLGEKVRAGEANADELCSWHEKLYEKDPANLIPPGVYSFQQ
LLDYCKQEGTCPYFTVRRMMPLCNIVIYSYHYIIDPKVAVRVSKDLSKDSIVIFDEAHNI
DNVCIEALSMDIDEDMLQRATRGANDLSRKVDQVKKVDSSRLQDEYEKLVAGLRESDMLK
ESEEPFMENPILPSDVLQEAIPGSIRRAEHFISFMKRFIEYLKTRMKVLHVISETPTSFL
QHLKQLTYIDRKPLRFCSERLSMLVRTLEVTDIEEFTSLKDIATFATLVSTYENGFMLIL
EPYETENATVPNPILRFTCMDASIAIKPVFDRFPSVVITSGTISPLDMYPRMLNFDTVVQ
ESYAMTLDRRAFLPLIVTKGSDQVAISSRFEIRNDPSVVRNYGTLLMEFVKITPDGMVVF
FPSYLYMESIISMWQGMGILDEVWKYKLILVETPDAQETALALETYRKACLNGRGAVLLS
VARGKVSEGIDFDHYYGRTVLMIGIPFQYTESRILKARLEFLRDNYQIRENDFLSFDAMR
HAAQCLGRVLRGKDDYGVMVLADRRFLRKRSQLPKWIAQGLLDANVNLSTDMAIAAAKKF
LRTAAQPLNPKDQEKGVSVWNIEQLRSYQKQQKKINDANGLNDADSMSDNMDVTSENDSN
KDDHKNDFNNNEKSTADIIQTTA
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atgaagttttttatcgatgatcttccaatactttttccgtatccaaagatttatccagag
caatatgcatacatgtgtgatgtgaagaagtgcatagatgttggtggtaatggtgtgttg
gagatgccctctggaacgggtaaaactattgcactattagccttgtcagtggcttatcag
atgtactacccagagcataggaagataatatattgttcacgtaccatgtcagaaattgag
aaggcgttaattgaattggaaaagctaatggactacagggcaaaggaactaggacatgtg
gagaatttcagaggattaggcttgacaagtagaaagaacctatgtttacatccagtagtt
ggaaaagaaaagaagggtacagtggttgatgagatgtgtcgacgtttgaccaatggtcaa
cttggagagaaagtgagagctggcgaggcaaatgcagatgagctttgttcttggcatgag
aaactatatgaaaaggatcccgcaaatttgattccaccaggtgtttattcctttcagcaa
cttttggactactgcaagcaagaaggaacttgtccatactttactgttcgtcgaatgatg
cccctctgtaatattgttatttattcttatcactatattatagatccaaaagttgctgtt
agagtttcgaaagatttatcaaaagatagtatagtgatatttgacgaggcccataatata
gataatgtttgtattgaagctttatccatggatatagatgaggatatgctgcaaagagca
acacgtggtgcaaacgatcttagccggaaggttgatcaagttaaaaaagtggatagctcg
aggttacaggatgaatatgaaaagctcgttgcaggacttagagaatctgatatgctgaag
gaatctgaggagcctttcatggaaaatccgatcttaccttccgatgtcttgcaggaagct
atacctggaagtataagacgagctgagcattttatctcgtttatgaaaagatttatagaa
tatttgaaaactcggatgaaagtgttgcatgttatttccgaaacgccaacctcttttctt
caacatttaaagcagctaacatacattgatagaaagccacttagattttgttcagaacgt
ctttctatgcttgtgagaacattagaagtcactgatatcgaagagttcacctctctcaag
gacatagcaacatttgcaactttagtttcaacatatgagaatggatttatgcttatattg
gagccatacgagacagaaaatgcaacagttccgaacccaatattgaggttcacctgcatg
gatgcatcaattgcaattaagcccgtgtttgatcgatttccgtctgttgttattacttcc
ggtactatatctccacttgatatgtatcctaggatgttaaactttgacactgtggttcaa
gaatcttacgctatgactttggatcgaagagcattcttacctctgatagtcaccaagggt
tctgatcaagtggctatttcttctcggtttgagatcagaaacgatcctagtgtggtcaga
aattatggaactttgctcatggagttcgtcaagattacacctgatggaatggttgtcttc
tttccctcatatttgtatatggaaagtatcatatctatgtggcaaggtatgggtatttta
gatgaagtctggaaatacaaattgattctagtggaaactccagatgctcaagaaactgca
ttggcattggaaacttacagaaaagcgtgcttaaatggtcgaggcgctgtattactttct
gttgctcgtggtaaggtttccgagggtatcgattttgatcattactacggacgaactgtt
cttatgataggaattcctttccaatatactgaatccagaattctcaaggctaggcttgaa
tttttgagagataactatcaaattcgtgaaaatgattttctttcctttgatgccatgaga
catgccgcacagtgcttgggacgtgtccttaggggaaaagatgattatggtgtaatggtg
cttgcagatcgaagattcctaagaaagaggagtcagcttcctaaatggatagcccaggga
ttgttggatgcaaatgtgaatttatctacagatatggcaattgctgctgcgaaaaagttt
ttgagaactgcagcacaacctttaaatccaaaggatcaggaaaaaggtgtttcggtttgg
aacatagaacagcttcgaagctatcaaaagcagcagaaaaagataaacgatgcaaatgga
ttaaatgatgccgatagtatgagcgataatatggatgtcacatcagaaaatgattcaaat
aaagatgatcacaagaatgacttcaataataatgaaaagtcaactgctgatatcattcaa
accactgcataa
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