Brettanomyces bruxellensis: BRETT_005000
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Entry
BRETT_005000 CDS
T07183
Name
(RefSeq) uncharacterized protein
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
bbrx
Brettanomyces bruxellensis
Pathway
bbrx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbrx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BRETT_005000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbrx03019
]
BRETT_005000
Messenger RNA biogenesis [BR:
bbrx03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
BRETT_005000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
TPR_Epg5
Motif
Other DBs
NCBI-GeneID:
64576923
NCBI-ProteinID:
XP_041136838
UniProt:
A0A871R855
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All DBs
Position
7:1206749..1209226
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AA seq
825 aa
AA seq
DB search
MSGENKDDPLHGLAPKLVGLVRLCSALNSKDIDFYRSIDSGIKQESDDVRTKLLDMLNRL
VKSSISISTDLDPEQFIIKDGKENEKQNMKLIGDLLDTFFENVEIGMDAYKKSRIHEYDN
GAKSGTAGTNTEEEGPDGVKYTYLDDADNSTSKKLPIQMQHSKIEKPQTKFVPKVDNFEK
HPFKPKIDSKPNAVIPFEKSMELVPASEAIPQHYINPYEYEIMNAKYPDWIFSPIEHPYT
SVPWKSSPQPGWVDNVEQLKALLSELEKCKVIGVDLEHHDYRTYHGLTSLMQISTDTGKD
YIVDPLSAQLRPHLSLLNIVFTNPDIIKVFHGAFMDMMWLQRDLGLYVVSLFDTYWAAKE
LALGKYSLAFLLEKYIHFRTSKKWQLADWRIRPLGPEMRNYAKADTHFLIELFGKIQAEL
IKKPGAMKRVLYHSRKVSNRRFEYATYKPRNAAAFGVVSTGGSVPLTPEFQDALFSFDTS
RELPWLSLMRSNGIPDTKGPVVEALYKWRDNKARKEDESIRYIMSDFVLTSLANSFSPGA
IDQITEAAVLNVINRSARFGSSYYVRKCIKDLTVLIRDVMKQLSRIDLKAWQLAAGTITP
PVLSNTKIDAKNVYSSVRDVERLDDEFAGLSSQFEKLNFPGKTDEQTARCSLEKADPQLF
AGKESVGIRYSKGGNAATPVSKKEAKSRLDKIVDRFAKNTERVTLADLQIEEEAKHENAN
EIQNEEAEHDVDEQRPKREDKNEIITLRKHQNRNNRRRGKVQRNDGESIDLSKRLLEPID
DRKRRRKHKKRSYDPYADSSKQNPNIPLARKRKRRDLGKQATFKK
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atgtctggagagaataaagatgatcctttacatggattggcaccaaagctggtaggcctc
gttcggctttgttctgcattgaattctaaggacatagacttttatcggagtatagactcc
ggaataaagcaggaaagtgatgacgttcggacgaaattattggatatgcttaatcgatta
gttaaatcttctatttccatatcaacggatttggatcccgaacaattcattatcaaggat
ggcaaagaaaacgagaagcagaacatgaaattgattggagatcttcttgacacgtttttt
gaaaatgttgaaattggcatggatgcatataaaaagtccagaattcacgaatatgataat
ggagctaaatcaggcacggcaggcacaaatacggaagaagagggtccagatggagtcaag
tacacatacttagacgatgcagataactctacgagtaaaaagcttccgatccagatgcaa
cattcgaaaatcgaaaagcctcaaacgaaatttgtgccgaaagtggataactttgaaaag
catcctttcaagcccaagattgattcgaagccaaatgcggttattccatttgagaagagc
atggagcttgttccagcctcagaggcaattccacagcattatattaatccatacgagtac
gagattatgaatgctaaatacccagattggatattttcacccatagagcatccttacaca
tctgttccctggaagagcagcccacaacctgggtgggttgataatgtggagcaacttaaa
gcactattgtccgagttagagaagtgtaaagtgataggtgttgatttggaacatcatgat
taccgaacatatcatggtcttacatctttaatgcagatttcaacggacaccggcaaggat
tacattgttgacccgctttctgcacagctaaggcctcatttaagcctactaaatattgtc
ttcacaaatccagatatcatcaaagtgttccatggagcatttatggatatgatgtggctt
cagagggatttgggcctatacgtggtttcgctatttgatacctactgggcggcaaaagag
ttggctctgggcaaatattcgttggcatttcttttggagaagtacattcattttcgtaca
tcgaagaaatggcaacttgcagactggagaattcggcctttgggacccgaaatgaggaat
tatgctaaggccgatacacatttccttatagagctgtttggaaagattcaagccgagctc
ataaagaaaccaggtgccatgaaacgagttttataccattcacgaaaagtttcaaaccgg
agattcgagtatgcaacgtacaaacctcgaaatgccgcagcgtttggtgttgtttcaaca
ggtggctctgttccacttacaccagaattccaggatgctttatttagctttgatacaagc
agagagctcccttggctatcgctgatgcgttcaaacggtattccagatactaaagggcca
gtggtcgaggcattgtacaaatggagagataataaagcacggaaagaagatgaatcgatt
agatacatcatgtcagactttgttttgacatcattggccaattcattttctcctggggcc
attgatcaaattacggaggcagcagtgctgaatgtgattaatagatccgccagatttggc
tcctcatactatgtgaggaaatgcatcaaagatcttactgtgttgattagagatgtgatg
aagcaactgtctagaattgacctgaaagcatggcagcttgctgctggtacaattacacct
ccggtcctgtcaaacacaaaaattgatgccaagaatgtgtattcatctgtgagagatgtc
gagagactagatgacgaatttgcaggcctttcctcgcaatttgaaaagctgaatttcccg
ggaaagacagatgaacagacagcaagatgctctcttgaaaaagcagacccacaattattt
gcaggtaaggaatctgttggaattcgatactctaaaggtggaaatgcagccacgccagtc
tcaaagaaagaggccaaaagcaggttggacaagattgtggacagattcgcaaagaataca
gagagagttactcttgcagacctacaaatagaggaagaagccaagcatgaaaatgcaaat
gagatacagaatgaagaagctgaacatgatgtagatgagcaaaggccaaagagggaggac
aaaaatgaaattataacactaagaaagcatcagaacagaaataacaggaggagaggaaaa
gtacaaaggaatgatggagagagtattgatttatcgaaaagattactcgaaccgattgac
gacagaaagagaagaagaaagcacaaaaagagatcatacgatccatatgcggattcttcg
aagcagaatccaaatatacctcttgccagaaagaggaagaggagggacctgggaaagcag
gccacttttaagaaatag
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