Bradyrhizobium sp. BTAi1: BBta_4204
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Entry
BBta_4204 CDS
T00528
Name
(GenBank) RNAse E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bbt
Bradyrhizobium sp. BTAi1
Pathway
bbt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBta_4204
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbt03019
]
BBta_4204
03009 Ribosome biogenesis [BR:
bbt03009
]
BBta_4204
Enzymes [BR:
bbt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BBta_4204
Messenger RNA biogenesis [BR:
bbt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BBta_4204
Ribosome biogenesis [BR:
bbt03009
]
Prokaryotic type
rRNA processing factors
BBta_4204
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
CDC45
Motif
Other DBs
NCBI-ProteinID:
ABQ36261
LinkDB
All DBs
Position
4414850..4418062
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AA seq
1070 aa
AA seq
DB search
MPNKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPVADRQALIEAEERAHREAEEESENRSNRRRNRHRSSRR
RGSGERVQSEIIEAADASQAPHGETHEGDHGAFEAPDAAYAQDNHPADDAGAETPAQTAG
FAEAPLEAPTHAAHDEGTHDAQPHHGSDAPAVADSEPAQGGTDLPVSPSAVAAAASSGEV
ASSEADDAAEAHDHDHHDHDHHDHDHDDHHDDDHHEDHDEHGHEDSADLSPVAEHDDDGE
VTIVPGDDNGVEPAVADHDDDDEDGEEIEEEVVESVGGDDVLEEVPERTFRPRRQYKIQE
VIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYAVLMPNTARGGGISRKITSAQDRSRL
KEVVQDLDVPEGMGVILRTAGANRTKPEIKRDFEYLLRLWETVRDMTLKSQAPTLVYEEG
SLIKRSLRDLYNKEIDEILVAGEAGYREAHDFMKMLMPTNVRAVKQYRDGQPLFSRMGVE
SQLDAMFSPTVQLRSGGYIVINQTEALVSIDVNSGRATREHHIEDTALKTNMEAAEEVAR
QLRLRDLAGLIVIDFIDMDEKRNNRSVERKLSDCLRQDRARIQVGRISHFGLLEMSRQRI
RASVLESSTEPCAHCGGTGHVRSVSSVALQLLRSLEETLMKGATHNLVVRTRTEVALYVL
NHKRGHLRDLENSFKVSLAVIADPNVSGQQSFIIDRGEQVHTLEAAKALLAAQASAPPLV
ADEVYDEDEPFDIETESEVETEETEGLSEEAAEASETERDGARRKRRRRRRGRGGNEARE
ATPEGATAAESLEVGTAAELPAEDAETEDEDSDEQPAFASGDQPSDQANGERRPRRRGRR
GGRRRRGGIDDGLAASISDDLAPASASEAEAAVADFDGNGVPHGDEPEAPVEAAPAAEVA
LAEQPVAPAAPAAIQPETQPAEPAKAEPEKTPRRSTVREKVSLFTEPKSTELKPDSAVVS
VNVAESTPTVAAAAPEAVTTEPTATEPAPEAAPAAPRKAGWWSRRFGGGQ
NT seq
3213 nt
NT seq
+upstream
nt +downstream
nt
atgccgaacaagatgttgatcgatgctacccacccggaagagacccgggtcgttgtcgtc
cgcggcaaccgcgtcgaggaatttgattttgaaactgcccagcgcaagcaactccgcggc
aacatctacctcgccaaggtcacccgggtagagccgtcgctccaggcggccttcgttgaa
tatggcggcaatcgccacggcttcctggcgttcagcgaaatccaccctgattattaccag
atcccggtcgccgatcgtcaggcgctgatcgaggcggaagagcgcgcccaccgcgaggcc
gaggaagagagcgagaaccggtccaatcgccggcgcaaccggcaccgcagctcgcggcgc
cgcggcagcggcgagcgcgttcagagcgagatcatcgaggccgccgacgccagccaggcg
cctcacggcgagacgcatgagggcgatcacggcgcattcgaggcgccggacgccgcctac
gcgcaggacaaccaccccgccgatgatgcgggcgcggagacccctgcacagacagcaggc
ttcgccgaggcgccgcttgaggctccaacgcacgccgcccatgacgaagggacccacgac
gcgcagccgcatcacggttcggatgcgccggcggttgcggattccgagcccgcgcagggc
ggcaccgacctcccggtgtccccttctgcggtcgcagcggccgcgtcgagcggcgaggtt
gcctcgtccgaggccgacgacgccgccgaggcgcacgatcacgaccaccacgatcacgac
catcacgatcacgatcacgatgaccatcacgacgatgatcatcacgaggatcatgacgag
catgggcatgaggactccgccgatctctcgcccgtcgccgagcacgatgatgatggcgag
gtcacgatcgttccgggcgacgacaatggtgtcgagccggccgtcgcggatcacgacgac
gacgacgaggacggcgaggagatcgaggaagaggtcgtcgaatccgtcggcggcgacgac
gtgctcgaggaagtgcccgagcgcaccttccgtccgcgtcgccagtacaagatccaggag
gtcatcaagcgccgccaggtgatgctggtgcaggtcgtcaaggaagagcgcggcaacaag
ggcgccgcgctgacgacctatctgtcgctcgccggccgctatgccgtgctgatgccgaac
accgcgcgtggcggcggcatcagccgcaagatcacctcggcgcaggaccgctcgcgcctg
aaggaagtggtgcaggacctcgacgtgcccgagggcatgggcgtcatcctgcgcaccgcc
ggcgccaaccgcaccaagcccgagatcaagcgcgacttcgaatatttgctgcggctgtgg
gaaacggtccgcgacatgaccttgaagtcgcaggcccccaccctcgtctacgaggaaggt
tcgctgatcaagcgctcgctgcgcgacctctacaacaaggagatcgatgagatcctggtt
gccggcgaagccggctaccgtgaggcgcacgacttcatgaagatgctgatgccgaccaac
gtccgggcggtgaagcagtatcgcgatggccagccgctgttttcgcggatgggtgtcgag
agtcagctcgatgcgatgttctcgccgaccgtgcagctgcgttcgggcggctacatcgtg
atcaatcagaccgaggcgctcgtctcgatcgacgtgaactccggccgcgccacccgcgag
catcacatcgaggacaccgcgctcaagaccaatatggaagcagccgaggaagtggcgcgg
cagctccggctgcgcgacctcgccgggctgatcgtcatcgacttcatcgacatggacgag
aagcgcaacaaccgctccgtcgagcgcaagctgtcggactgtctgcggcaggatcgcgcg
cgcatccaggtcggccgcatctcgcatttcggcctgctggagatgtcgcgccagcgcatc
cgcgccagcgtgctggagagctcgaccgagccctgcgcgcattgcggcggcaccggccat
gtgcgctcggtgtcctcggtggcgctgcagctgttgcgcagcctcgaagagacgctgatg
aagggggcgacccacaacctcgtggtccgcacgcggaccgaggtggcgctctacgtgctc
aatcacaagcgcggccatctgcgcgacctcgagaacagcttcaaggtctcgctggccgtg
atcgccgatccgaacgtcagcggtcagcaatccttcatcatcgatcgcggtgagcaggtg
cacacgctcgaggccgccaaggcgctgctggctgcgcaggcctctgctccgcctttggtg
gccgacgaggtctatgacgaggacgagccgttcgacatcgaaacggaatccgaggtcgaa
accgaggaaaccgagggcctgtcggaagaggccgccgaggccagcgaaaccgagcgtgac
ggcgcccgccgcaagcggcgtcggcgccgccgcggccggggcggtaacgaggcgcgcgaa
gcgactcctgaaggagctacagcggcagagtccctcgaggtgggcaccgcggccgaactg
ccggccgaggatgccgagacagaggacgaggacagcgacgagcagccggccttcgcgtca
ggcgaccagccgagcgaccaggccaatggtgagcggcgcccgcggcggcgcggccgccgt
ggcggtcgccgtcggcgcggcggcatcgatgacggtctggccgcatcgatcagcgacgat
cttgcaccggcctctgcgtccgaggccgaggccgccgtcgccgatttcgacggcaacggc
gtcccccatggtgacgagccggaagccccggtcgaggctgcccccgcagcggaagtcgcc
ttggccgagcagcccgtcgcaccggcagctcctgctgcaatccagcccgagacgcagccg
gccgagcctgcgaaggccgagcccgagaagaccccgcgtcgctcgaccgtgcgcgagaag
gtcagcttgttcaccgagcccaaatccaccgagctcaagccggacagcgcggttgtctcg
gtcaacgttgccgagagcactcccaccgtggctgctgcggcgccggaggcggtaacgacc
gagccgaccgcgaccgagcccgctccggaggccgcgcccgcggccccccgcaaggccggc
tggtggtcgcgccgtttcggcggcggccaataa
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