Bradyrhizobium sp. BTAi1: BBta_5290
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Entry
BBta_5290 CDS
T00528
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bbt
Bradyrhizobium sp. BTAi1
Brite
KEGG Orthology (KO) [BR:
bbt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bbt03016
]
BBta_5290
Enzymes [BR:
bbt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
BBta_5290
Transfer RNA biogenesis [BR:
bbt03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
BBta_5290
Prokaryotic type
tRNA splicing ligases
BBta_5290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
HTH_17
Motif
Other DBs
NCBI-ProteinID:
ABQ37274
LinkDB
All DBs
Position
complement(5520326..5521666)
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AA seq
446 aa
AA seq
DB search
MRADPYKDRARELAIEAGLDPDARIERPGQRAMPLWCTFRDAARKEQLAREAKALADTVA
SRPQAAQYQNSPLKVFGSHEEATIAQMKNCMSVGNAVAGVICADGHLGYAQPVGGVIAYE
KQISISGVGFDIGCGNMAVRLDTQFTAIEDKVGTIIKDVSKVISFGVGRKNAERVEHELF
DDADAWRESDMDAYRQKAVAQLGTVGSGNHYVDLMRDEKGFVWVGVHFGSRGLGHTSATR
YLKAAGGKDGMNVPPAVVDEESEIGQRYIAAMQLAGRYAYAGREWVVERVRQIIGGAVTD
SVHNHHNYAWRETHDGRDLWVVRKGATPAFPGQRGFVGGSMGDDAVIIEGVESEEAKASL
YSTVHGAGRLFGRREAKRRFTRVEMDEWLQSRGVTLIGADLDESPMAYRRLPEVLAEHAG
SVKVVHTLQPFAVVMAGEGEFDPFKD
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgcgagccgatccctacaaagaccgtgcgcgagagctggccatcgaggccgggctcgat
ccggatgcgcggatcgagcggcccgggcagcgcgcgatgccgttgtggtgcacgttccgc
gacgccgcgcgcaaggagcagctcgcgcgcgaggccaaggcgctggccgatacggtcgcg
agccggccgcaggcggcgcagtatcagaacagcccgctgaaggtgttcgggagccacgag
gaggcaaccatcgcgcagatgaagaactgcatgagcgtcggcaatgctgtcgccggcgtg
atctgtgccgacggtcacctcggctacgcccagccggtcggcggcgtgatcgcctatgag
aagcagatcagcatctccggcgtcggcttcgacatcggctgcggcaacatggcggtgcgg
ctcgacacgcagttcaccgcgatcgaggacaaggtcggcacgatcatcaaggacgtgtcg
aaggtgatctcgttcggcgttggccgcaagaatgctgagcgtgtcgagcacgagctgttc
gacgatgccgatgcctggcgggagtccgacatggacgcctaccggcagaaggcggtggcg
cagctcggaacggtcggctcgggcaaccactatgtcgatctgatgcgcgacgagaaaggc
ttcgtctgggtcggcgtgcatttcggcagccgtggcctcggccacacttcggcgacgcgc
tacctcaaggccgccggcggcaaggacggcatgaacgtgccgcccgccgtcgtcgacgag
gagtcggagatcgggcagcgctacatcgccgcaatgcagctcgccgggcgctatgcctat
gcgggccgcgagtgggtggtggagcgcgtgcgccagatcatcggcggcgcggtcaccgac
agcgtgcacaaccaccataactacgcctggcgtgagacccacgacgggcgtgatctgtgg
gtggtgcgcaagggcgccacgccggcctttccgggccagcgcggcttcgtcggcggctcg
atgggcgacgacgcggtcatcatcgagggcgtcgagtcggaggaggcgaaagcctcgctg
tactcgacggtgcacggtgctggccgtctgttcggacggcgcgaggcgaagcgccgcttc
acgcgtgtggagatggacgaatggctgcagagccgcggcgtcaccctgatcggcgccgac
ctcgacgagagcccgatggcctatcgccgtctgcccgaggtgctggccgagcacgccggc
tcggtgaaggtcgtgcacacgctgcagccgttcgccgtggtgatggccggcgagggcgag
ttcgatccgttcaaggattga
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