Bradyrhizobium sp. BTAi1: BBta_7352
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Entry
BBta_7352 CDS
T00528
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
bbt
Bradyrhizobium sp. BTAi1
Brite
KEGG Orthology (KO) [BR:
bbt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbt03019
]
BBta_7352 (hrpB)
Enzymes [BR:
bbt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BBta_7352 (hrpB)
Messenger RNA biogenesis [BR:
bbt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BBta_7352 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
CON_HrpB
HA2_C
AAA_30
AAA_19
Flavi_DEAD
ResIII
Motif
Other DBs
NCBI-ProteinID:
ABQ39216
UniProt:
A0ABF7QFW0
LinkDB
All DBs
Position
complement(7716628..7719102)
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AA seq
824 aa
AA seq
DB search
MPLRFDTPLPIDAVLDALSGTLERSNTAVLVAPPGAGKTTRVPLALRDAPWVGDRKIIVL
EPRRIAARASAERMAKSLGERAGDTVGYRVRFGSKVSRATRIEVVTEGIFTRQILDDPEL
TGIAAVLFDEFHERSLDADLGLALARDAQQGLREDLRILVMSATLDGARVARLLGDAPVV
ESEGRAFPVETRYVGRKPDAPVERQMAETIASALRADAGSVLAFLPGAAEIRRTQTMLAE
RVHDASVEIVPLFGALDAAVQDRAISPAPKGGRKVVLATSIAETSLTIEGVRIVVDSGLA
RVPRYEPDIGLTRLETVRASRAAVDQRRGRAGRTEPGVCYRLWDEPQTASLAAYTQPEIL
SADLSSLVLDLAQWGVSDPATLSFLDPPPQPAWKEARDLLNELGALDDDGRLTDEGRRLR
ALALPPRLARMIVDAADHGAAAQAADIAAILTERGLGGDSVDLEVRLDQFRRDRSARAQS
ARDLARRWAQQVATSASPQDDGALTTGLMLAFAFPDRVARNRGNGSFVLANGRGAAVEQT
SSLARVPYIAVGELTGTAANGRILLAAPLAIEDIERHFAAHIEAKDEVSFDRDAMTLRAR
RRRKLHAITLADAPVALTPSEETAHIFADGICAAGLDRLPWSKAAKQWRDRVMFLRKAEG
DSWPDLSDTGLIERRDDWLVPLLANKISLKDISPGDVSDAVMALLPWDLRARLDREAPTH
FEAPTGTMLAIDYEAEQGPTIAVRLQELFGLNIHPSIARGAVPLVLELLSPAQRPVQVTR
DLPGFWRGSYAAVRSDLRGRYPRHPWPDDPATAQPTRRAKPRGT
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
ttgcctctgcgctttgacacaccgctgccgatcgacgccgtgctggacgcattgtccggc
acgctcgaacgcagcaacacggccgtgctggtcgccccgcccggcgccggtaagaccacg
cgggtgccgctcgcgctgcgcgatgcgccctgggtgggggatcggaagatcatcgtgctg
gagccgcgccgcatcgcggcccgcgccagcgccgagcggatggcgaagtcgctcggcgag
cgcgccggcgacaccgtcggctatcgcgtgcggttcggctccaaagtgtcgcgcgcgacc
cgcatcgaagtggtcaccgaaggcatcttcacccggcagattctcgacgatcccgaattg
accggcattgccgccgtgctgttcgacgaattccacgagcgctcgctcgatgccgatctc
ggcctcgcgcttgcccgtgacgcgcagcaggggctgcgtgaggatctgcgcatcctggtg
atgtcggcaacgctcgacggcgcccgcgtcgccaggctgctcggtgatgcgccggtggtc
gagagcgagggccgcgcctttccggtcgagacgcgctatgtcggccgcaagccggatgca
ccggtcgagcgccagatggctgagacgattgccagcgcactgcgcgcggatgccggttcg
gtgctggcgttcctgccgggcgcggccgagatccggcgcacccagaccatgctcgccgag
cgggtccacgatgccagcgtcgagatcgtgccgctgttcggtgcgctcgatgctgcggtc
caggaccgcgccatctcgcccgcgccgaaaggcggccggaaggtggtgctggcgacatcg
atcgccgagacgtccttgaccatcgagggcgtgcgcatcgtggtggattccggccttgcc
cgcgtgccgcgctacgagcctgatatcggcctgacgcggcttgagacggtgcgggcctcg
cgcgcggcggtcgatcagcgccgcggccgtgccggacggaccgagcccggcgtctgctac
cggctctgggacgagccgcagaccgcctcgctggctgcttatacacagccggaaatactc
agcgccgatctgtcctcgctggtgctcgatctcgcgcaatggggtgtcagcgatcccgcc
acattgagcttcctcgatccgccgccgcagccggcctggaaggaggcccgtgatctcctg
aacgagctcggtgcgctggatgacgatggaaggctgacggatgagggcaggcggctgcga
gcgctggcgctgccgccgcggctcgcccgcatgatcgtcgatgccgccgatcatggcgcc
gcggcgcaggcggcggacatcgcggccatcctgaccgagcgcggtctgggcggtgacagc
gtcgatctggaggtcaggctcgaccagttccgccgcgaccgctcggcgcgggcgcagagc
gcgcgcgatctggcgcggcgctgggcgcagcaggtcgcgacctctgcctcgccgcaagac
gacggcgcgctgacgaccggtctgatgctcgctttcgccttcccggatcgggtggcgcgc
aaccgcggcaatggcagtttcgtgctggcgaatggccgcggcgccgccgtcgagcagacg
tcgtcactggcgcgggtgccctatatcgcagtgggcgaactgaccggaacggcggcgaac
ggccgcatcctgctcgcggcgccgctcgcgatcgaggacatcgagcgtcatttcgcggct
cacatcgaagcgaaggacgaggtcagttttgatcgcgacgccatgacgcttcgcgcgcgg
cgccggcgcaagctgcacgcgatcaccctggccgacgcgccggtcgcgctgacgccgtcg
gaggagaccgcgcacattttcgcggacgggatctgcgcggccggcctcgaccgactgccc
tggtccaaggctgcgaaacaatggcgggaccgggtgatgttcctgcgcaaggcggagggc
gacagctggccggatctgtccgacaccggcctgatcgagcgccgcgacgactggctggtg
ccgctgctcgcgaacaagatttcgctcaaggacatttcacccggtgacgtttccgatgcg
gtgatggcgctgctgccctgggatctgcgcgcgcggctcgaccgggaggcgccgacccat
ttcgaggcgccgaccggcaccatgttggccatcgactatgaggcggagcaggggccgacc
attgcggtgcggttgcaagagctgtttggcctcaatatccatccgtcgatcgccaggggg
gccgttccgctggtgctcgagttgttgtcacccgcccaacggccggtgcaggtgacacgc
gatctgcccggcttctggcgcggctcctacgcggccgtgcgttccgaccttcgtggccgc
tatccgcgccatccctggccggacgatcccgcgaccgcgcaaccgacccggcgggcgaag
ccgcgcggcacctag
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