Bubalus bubalis (water buffalo): 102389047
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Entry
102389047 CDS
T05912
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain isoform X2
KO
K06237
collagen type IV alpha
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub04151
PI3K-Akt signaling pathway
bbub04382
Cornified envelope formation
bbub04510
Focal adhesion
bbub04512
ECM-receptor interaction
bbub04820
Cytoskeleton in muscle cells
bbub04926
Relaxin signaling pathway
bbub04933
AGE-RAGE signaling pathway in diabetic complications
bbub04974
Protein digestion and absorption
bbub05146
Amoebiasis
bbub05165
Human papillomavirus infection
bbub05200
Pathways in cancer
bbub05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
102389047 (COL4A4)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102389047 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102389047 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
102389047 (COL4A4)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
102389047 (COL4A4)
09154 Digestive system
04974 Protein digestion and absorption
102389047 (COL4A4)
09158 Development and regeneration
04382 Cornified envelope formation
102389047 (COL4A4)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
102389047 (COL4A4)
09162 Cancer: specific types
05222 Small cell lung cancer
102389047 (COL4A4)
09172 Infectious disease: viral
05165 Human papillomavirus infection
102389047 (COL4A4)
09174 Infectious disease: parasitic
05146 Amoebiasis
102389047 (COL4A4)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
102389047 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
bbub04147
]
102389047 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
bbub00536
]
102389047 (COL4A4)
Exosome [BR:
bbub04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
102389047 (COL4A4)
Glycosaminoglycan binding proteins [BR:
bbub00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102389047 (COL4A4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
102389047
NCBI-ProteinID:
XP_044793834
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All DBs
Position
2:complement(167449865..167601208)
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AA seq
1645 aa
AA seq
DB search
MALVRCPFRCNKLLATNSWSLILILFSVQYAYGGGKKFIGLCGGRDCSLCQCFPEKGSRG
QPGPPGPQGPIGPLGPPGPIGIPGEKGMKGDSGRPGAAGDKGDKGPTGVPGFPGLDGIPG
HPGPPGSRGRPGIDGYNGSRGDPGIPGERGALGPRGPPGLPGEKGEKGNSVFILGATKGM
QGDRGDPGPPGSPGSRGVRGPAGPAGYPGEPGLAGPPGPPGSPGLKGNPGVGVKGQMGDP
GEVGQQGSPGPTLLVQPPDSGLYKGEKGIKGMPGMTGPPGPPGHRGEPGIGRKGEKGIPG
FPGPRGDPGSYGSPGFPGLKGEPGLFGDPGSFGFLGPKGDPGDRGHPGPPGVLVTPSLPL
KGPPGDPGHPGHYGETGAVGPRGPPGAPGRPGEACPGMTGPPGPRGFPGHPGFPGAAGVP
GRADSAPGKPGNQGPTGLPGVPGLPGPPGSDVVYCTVGQPGPQGIKGKVGPPGRRGSKGE
KGSSGLCACQPGPMGPSGPPGPPGRQGSKGDLGLPGWLGEKGSPGPPGAKGSPGPPGKPG
ASGLPGSKGEKGDMVVSRVKGHKGERGPDGPPGLPGQQGQHGRDGYAGEKGDTGPPGDHE
DAAPGDKGPPGPPGPPGRAGPRGPPGLGFPGPPGDRGQPGAPGCPGNRGPDGRKGRKGDT
IPCNVTYPGRPGPPGFDGPPGPKGLPGHRGAPGLRCLDGQKGQRGKPGISERPGPPGFRG
DIGEPGSGGEKGSSPVGPPGAPGSPGVNGQKGHPGDPAIGYPGLPGKSGLPGAPGSKGLR
GDDGRPGTTGPAGMPGFPGLQGPKGREGNAGFPGIPGLPGHSCERGAPGIPGQPGLPGAP
GSPGAPGWKGQRGDMGPLGPAGMKGLPGVPGWPGADGTPGLPGVPGPTGDDGLPGLPGPK
GPQGLPGFLGFPGERGKPGQDGHPGRKGEHGEKGWPGFLGDRGLKGVKGARGPPGYEGEM
DIISKKGETGEPGASGDGGFPGENGDKGHPGMQGRRGEPGSHGPPGFHPGEPGRNGQPGL
PGPPGPPGSPGLRGNIGFPGFPGDQGEPGSPGCPGPSGMDGTRGPKGYKGESASQFGLPG
PKGEPGGPGYPGRLGASGEQGLPGAQGPGGPPGRPGPPGLFGPTGCPGSPGGPGLQGPPG
EAGDPGPRGVLGDPGAPGLPGIKGPSGSPGLNGLHGLKGQKGSKGASGSHEMGPPGPVGM
PGPKGETGDPGNPGISPPGLFGERGPPGPPGPPGRAGLPGPPGAPGKALKGDIPDTGLPG
DQGPPGPDGPRGVPGPPGPPGSVDLLKGEPGDCGLPGPPGLPGPPGPPGHKGFPGCDGKH
GQKGPMGFPGPQGPPGSPGPPGDKGLPGPPGRRGPLGPPGSRGEPGPPADLDACPRIPGL
PGVPGPRGPEGTMGLPGMRGPPGPGCKGEPGLDGRRGEDGLPGSPGPPGHKGDMGEAGCP
GAPGPPGPMGDPGPIGFGPGYLSGFLLVLHSQTDGEPTCPMGMPRLWTGYSLLYLEGQER
AHNQDLGLAGSCLPIFSTLPFAYCNIHQVCHYARRNDRSYWLASTAPLPMTPLSEDEIRP
YISRCAVCEAPAQAVAVHSQDQSIPPCPRTWRSLWIGYSFLMVRLQSRPTAPQRTLSLHP
HNGISCREVTELSLCAWEKMKGRLN
NT seq
4938 nt
NT seq
+upstream
nt +downstream
nt
atggcactggtaaggtgtcctttcaggtgcaacaagctcttggccaccaattcctggtca
ctcatacttattctgttttctgtacaatatgcatatgggggtggaaagaagtttattggt
ctctgtggaggaagagattgctctctttgccagtgctttcctgaaaagggatctcggggt
caaccgggaccaccagggccacagggtcctattggacccctgggaccaccgggacccatt
gggatcccaggagagaaagggatgaaaggtgacagtggccgtcctggagcagcaggtgac
aaaggtgacaagggtccaaccggagttcctggatttccaggtctggatgggatacctggg
cacccagggcctcctggatccagaggcagacctggcatagatggctacaatggctcaaga
ggtgatccagggattccaggagaaagaggagctcttggcccacgaggccccccaggcctt
cctggagaaaaaggagaaaaaggaaattcagtgttcattttaggtgccactaaaggtatg
cagggcgacagaggggacccaggacctcccggctcaccaggatcaaggggagtgagaggc
ccagcaggcccagcggggtacccgggagagcccgggttagcaggacctccaggcccccct
ggcagtccaggcttaaagggtaatcctggcgtgggagtaaaggggcaaatgggagacccg
ggtgaggttggccaacaaggttctccaggacccactctgttggtgcagccacctgattct
ggtctctataaaggagaaaagggtattaaaggaatgcctggaatgactggacctcctgga
ccaccgggacacaggggagagcctggtattggaagaaaaggagagaaagggattcctggg
tttccaggacctcggggggaccctggttcctatggatctccaggttttccaggattaaag
ggggaaccaggactgtttggagatcctgggtcatttggatttcttggcccaaagggagat
cctggagaccgtgggcacccaggaccaccaggggttttggtaactccatctcttccactc
aaaggccctccaggggatccagggcaccccggccactatggagaaacaggggctgttgga
ccacgtggtcctcctggtgccccaggtcgaccaggggaagcctgtccaggcatgacggga
cctcctgggccacgagggtttcctggtcatccaggatttccaggggcagctggggttcct
ggaagagctgattctgctccaggaaaaccaggcaaccagggaccaactgggctgcctgga
gtgccgggactgccgggacctccgggatcagatgttgtatattgtactgttgggcaaccc
ggaccacaaggaataaaaggcaaagtgggtcctccaggaagacgaggctccaaaggagaa
aaagggagctcagggctctgtgcctgccagcctggtcccatgggcccatcaggccctcca
gggcctcctgggaggcaagggagtaagggagacttggggctccctgggtggcttggagaa
aaaggttccccaggccctcctggtgccaaaggatctccagggccaccgggaaaacctggt
gcctcaggactacctggcagcaaaggagaaaaaggtgacatggttgtatcaagagtgaaa
ggacacaaaggagaaagagggcctgatgggccccctggacttccagggcagcagggacaa
catggccgagatggatatgctggagaaaagggggacacggggccgcctggtgatcacgag
gatgcagccccaggtgataaagggcctcctggaccgccagggccccctggcagagcggga
cctagggggcccccaggcctgggatttcctggccctccaggagacagagggcaaccagga
gctccaggctgcccaggcaacaggggtcctgatggccggaagggtcggaaaggtgataca
attccttgtaacgtaacataccctgggaggccaggccctccaggttttgatggtcctcca
ggtccaaagggccttccaggtcatcggggtgctcctgggctgaggtgtttggatggacaa
aagggtcaacgtggcaaaccaggaatctcagaaagacctggtccacctggtttccgtggt
gatataggagaaccaggttcgggaggtgaaaaggggtcctcccctgttgggcccccagga
gctccaggttcacctggagtgaatggtcagaaaggacacccaggagatcctgctatcggc
tacccaggacttccgggaaagagcggacttccaggagcaccagggtccaaaggactcaga
ggcgatgacgggcgtccagggaccacagggccagctggcatgcccggatttccaggtctc
caaggtcccaagggccgagagggaaatgctgggtttccagggatcccaggcctacctggt
cactcctgtgaaagaggtgctccagggataccagggcaaccggggctccccggggctcca
ggcagtccaggtgccccaggttggaaaggacagcgaggggacatgggacctctgggacct
gctggaatgaagggccttcctggagtcccgggatggccgggggcagatggaaccccaggt
cttccaggggtcccaggccccactggagacgatgggctacctggtcttccaggcccaaag
ggaccccaggggctgcctggcttcctgggttttccaggagagagaggaaaacctggtcag
gatggacaccctggcagaaagggagaacacggagagaagggttggcctggcttcctggga
gaccgaggattgaaaggtgtcaaaggagcaagaggacccccgggatatgaaggagaaatg
gatattatttccaagaagggggaaactggagaacctggagcttctggggatggtggattc
ccaggagaaaatggtgataaaggtcatcctgggatgcaaggaaggagaggagagccagga
agccatggaccacctggatttcaccctggggagcctggaagaaatggacagccagggctt
cctggacccccaggccctccaggctcacctgggctgagaggcaacattggttttccagga
tttccgggtgaccagggtgagccaggttctccagggtgcccgggaccttcaggaatggat
ggtaccagaggacctaaaggatacaaaggggaatctgcaagtcagtttggcctacctggt
ccaaagggtgagccaggtggccccggatatccaggacgtttgggagcatctggagagcag
ggcttgcccggtgctcaaggtcctggaggaccacccggaaggccaggacctcctggcttg
tttggaccaacaggatgtccaggtagtccaggggggcctgggctgcagggacccccagga
gaagcgggggatcctggaccaagaggcgtcctgggggacccaggggcaccaggtcttcca
ggaataaaaggtccctctgggtcgcccggcctgaacggcctgcatggtttgaagggtcag
aaaggcagcaaaggcgcttcaggttcgcatgaaatgggccccccaggtccagtgggaatg
cctggccctaaaggggagacaggagaccccgggaacccaggaatttctcctccaggactt
tttggagaaagaggtcccccgggtcccccaggacccccagggcgagctggactgcctggt
cctccaggtgccccaggaaaagctcttaagggtgacattccagacacgggtctgcctgga
gatcaggggcctcctggccccgatggtccaagaggagtacccgggcctccaggaccacct
gggagtgtcgaccttctgaaaggagaaccaggagactgtggtctgccggggcctccaggt
ctcccaggcccaccaggccctccaggacacaagggcttcccaggatgtgatggaaaacat
ggccagaaaggaccaatgggattcccggggccgcaggggccacctggaagtcctgggcca
cctggagacaaaggtttacctggacctccaggcagacgagggcctttgggtcctccgggt
tccagaggtgagcctgggcccccagcagacttggatgcatgcccccgaatcccagggctt
cctggggtaccaggcccgagaggaccggaaggaaccatggggcttcctggcatgagaggc
ccgccgggaccaggatgcaaaggagagcctgggctggatggcaggaggggtgaggatggc
ctcccagggtcccctgggcctccgggacataaaggtgacatgggagaagcaggctgtcca
ggagcaccaggccctcctgggcccatgggggatcctgggcccatagggtttggcccggga
tacctcagtggcttcctcctggttctccacagtcagacggatggagaacccacctgcccc
atgggcatgcccaggctctggactgggtatagtttgctatacctggaaggacaggagaga
gctcacaatcaagacctaggtctggcgggctcctgcctgcccatctttagcacgctgccc
ttcgcctactgcaacatccaccaggtgtgccactatgcccggaggaacgacaggtcctac
tggctggcgagcacagcgcctctgcccatgactccactctcggaggatgagatccgcccg
tacatcagccgctgcgcagtgtgcgaggcccccgcccaggccgtggcggtgcacagccaa
gaccagtccatccccccgtgtccgcggacctggaggagcctctggatcgggtactccttc
ctcatggtacgcctacagagccgccccacagccccacaaaggacactttccctccatcca
cataatggcatctcatgcagggaagtgacagagctatcattatgcgcttgggagaaaatg
aagggccgacttaattaa
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