Bubalus bubalis (water buffalo): 102389314
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Entry
102389314 CDS
T05912
Symbol
PTCH1
Name
(RefSeq) protein patched homolog 1 isoform X3
KO
K06225
patched 1
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub04024
cAMP signaling pathway
bbub04340
Hedgehog signaling pathway
bbub04360
Axon guidance
bbub05200
Pathways in cancer
bbub05205
Proteoglycans in cancer
bbub05217
Basal cell carcinoma
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
102389314 (PTCH1)
04024 cAMP signaling pathway
102389314 (PTCH1)
09150 Organismal Systems
09158 Development and regeneration
04360 Axon guidance
102389314 (PTCH1)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
102389314 (PTCH1)
05205 Proteoglycans in cancer
102389314 (PTCH1)
09162 Cancer: specific types
05217 Basal cell carcinoma
102389314 (PTCH1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sterol-sensing
Patched
Motif
Other DBs
NCBI-GeneID:
102389314
NCBI-ProteinID:
XP_025137786
LinkDB
All DBs
Position
3:complement(143689917..143759342)
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AA seq
1388 aa
AA seq
DB search
MGKATGRKAPLWLRAKFQRLLFKLGCYIQKNCGKFLVVGLLIFGAFAVGLKAANLETNVE
ELWVEVGGRVSRELNYTRQKIGEEAMFNPQLMIQTPKEEGANVLTTEALRQHLDSALQAS
RVHVYMYNRQWKLEHLCYKSGELITETGYMDQIIEYLYPCLIITPLDCFWEGAKLQSGTA
YLLGKPPLQWTNFDPLEFLEELKKINYQVDSWEEMLNKAEVGHGYMDRPCLNPADPDCPA
TAPNKNATKPLDMALVLNGGCHGLSRKYMHWQEELIVGGTVKNSTGKLVSAHALQTMFQL
MTPKQMYEHFKGYEYVSHINWNEDKAAAILEAWQRTYVEVVHQSVAQNSTQKVLSFTTTT
LDDILKSFSDVSVIRVASGYLLMLAYACLTMLRWDCSRSQGAVGLAGVLLVALSVAAGLG
LCSLIGISFNAATTQVLPFLALGVGVDDVFLLAHAFSETGQNKRIPFEDRTGECLKRTGA
SVALTSISNVTAFFMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMDLYRREDR
RLDIFCCFTSPCVSRVIQVEPQAYTETHDNTRYSPPPPYSSHGFAHETQITMQSTVQLRT
EYDPHTHVYYTTAEPRSEISVQPVTMAQDTLSCQSPESTSSTRDLLSQFSDSSLHCLEPP
CTRWTLSSFAEKHYAPFLLKPKAKVVVIFLFLGLLGVSLYGTTRVRDGLDLTDIVPRETR
EYDFIAAQFKYFSFYNMYIVTQKADYPNIQHLLYDLHKSFSNVKYVMLEENKQLPKMWLH
YFRDWLQGLQDAFDSDWETGKIMPNNYKNGSDDGVLAYKLLVQTGSRDKPIDISQLTKRR
LVDADGIINPSAFYIYLTAWVSNDPVAYAASQANIRPHRPEWVHDKADYMPETRLRIPAA
EPIEYAQFPFYLNGLRDTSDFVEAIEKVRTICNNYTSLGLSSYPNGYPFLFWEQYIGLRH
WLLLSISVVLACTFLVCAVFLLNPWTAGIIVTVLALMTVELFGMMGLIGIKLSAVPVVIL
IASVGIGVEFTVHVALAFLTAIGDKNRRAVLALEHMFAPVLDGAVSTLLGVLMLAGSEFD
FIVRYFFAVLAILTILGVLNGLVLLPVLLSFFGPYPEVSPANGLNRLPTPSPEPPPSVVR
FAVPAGHTNNGSDSSDSEYSSQTTVSGISEELRHYEAQQGAGGPAHQVVVEATENPVFAR
STVVHPEPRHHPPSNPRQQSHLDSRTLPPGQPGQQPRRETPRECLRPPPYKPRRDAFEIS
TEGHSGPSNRDRTGPRGARSHNPRHHNPAFTAMGSSMPSYCQPITTVTASASVTVAVHPP
PAPGPGPSRNPRSGLCPGYEDYPETDHGLFEDPHVPFNVRCERREPKVEVIELQDVECEE
RRHGSSSN
NT seq
4167 nt
NT seq
+upstream
nt +downstream
nt
atggggaaagctactggccggaaagcgccgctgtggctgcgagcgaagtttcaaagactc
ttatttaaactgggttgttacattcaaaaaaactgcggcaagttcttggttgtaggcctc
ctcatatttggggccttcgctgtgggattaaaggcagctaatctcgagaccaacgtggag
gagctgtgggtggaagttggtggacgagtaagtcgtgaattaaattatactcgccagaag
attggagaagaggctatgtttaatcctcaactcatgattcagacccccaaggaagaaggt
gctaacgtcctgaccacagaagcgctccgacagcacctggactcggcgctccaggccagc
cgggtccatgtatatatgtataacaggcagtggaaattggaacatttgtgttataaatct
ggagaacttatcacagaaacaggttacatggatcagataatagagtatctttacccttgt
ttaattattacacctttggactgcttctgggaaggggcgaagttacagtctgggacggca
tacctactaggtaagcctcctttgcagtggacaaactttgaccctttggaattcctagaa
gagttaaagaaaataaactatcaagtggacagctgggaggaaatgctgaataaggctgaa
gttggtcatggttacatggaccggccctgcctcaatccagctgatccagactgtcccgcc
acagcccccaacaaaaatgcaaccaaacctcttgatatggcccttgttttgaatggtggg
tgtcatggattatccagaaagtatatgcactggcaggaggaactgattgtgggtggcaca
gtcaaaaacagcactgggaagcttgtcagtgcccatgctctgcagaccatgtttcagtta
atgactcccaagcaaatgtatgaacacttcaagggttatgagtatgtctcgcacatcaac
tggaacgaggacaaggcagcagcgatcctggaggcttggcagaggacgtacgtggaggtg
gttcatcagagtgttgctcagaactccactcagaaggtgctttcctttaccacgacaacc
ctggatgacatcctcaagtccttctctgatgtcagcgtcatccgagtggccagcggctat
ttactgatgcttgcctatgcctgtttaaccatgctgcgctgggactgctccaggtcccag
ggtgccgtggggctggctggcgtcctgttggttgcgctgtcagtggctgcaggattgggc
ctgtgctcgctgatcgggatttcctttaacgctgcaacaactcaggttttgccatttctc
gctcttggcgttggtgtggatgatgtctttcttctggcgcatgcatttagtgaaacggga
cagaataaaagaattccttttgaggacaggaccggggagtgcctcaagcgcacgggagcc
agcgtggccctcacctccatcagcaacgtcacagccttcttcatggccgcgttgatccca
attcccgctctgcgggcgttctccctgcaggcggctgtggtagtggtgttcaattttgct
atggttctgctgatttttcctgcaattctcagcatggatttgtatcgacgtgaggacagg
agattggatattttctgctgttttacaagcccctgtgtcagcagagtgattcaggttgaa
ccccaggcctacacagagactcacgataacacccgctacagccccccacccccctacagc
agccacggcttcgcccatgaaacccagatcaccatgcagtccacggtgcagcttcgcaca
gaatatgacccccacacacacgtgtactacaccactgccgagccacgctccgagatctcc
gtgcagcccgtcaccatggctcaggacacactcagctgccagagccccgagagcaccagc
tccacaagggacctgctctcccagttctctgactccagcctccactgccttgagcccccc
tgcaccaggtggacactctcatctttcgctgagaagcactatgctcctttcctcttaaaa
ccaaaagccaaggtcgtggtgatcttccttttcctgggcctgctgggggtcagcctttat
gggaccacccgagtgcgtgatgggctggatcttacagacattgtgcctcgggaaactaga
gaatatgactttattgctgcacagttcaaatacttttctttctacaacatgtatatagtc
actcagaaagcagattacccgaatatccagcacttactttatgaccttcataagagtttc
agtaatgtgaagtatgtcatgctggaagaaaataaacagcttcccaaaatgtggctgcac
tacttcagagactggctccaaggacttcaggatgcatttgacagtgactgggaaaccggg
aaaatcatgccaaacaattacaaaaatggatcggatgatggggtccttgcctacaaactc
ctggtacaaaccggcagccgtgataagcccattgacatcagtcagctgactaaacggcgc
ctggtggatgcagacggcatcattaaccccagtgctttctacatctacctgactgcttgg
gtcagcaatgaccctgtggcttatgctgcctcccaagccaacatccggcctcaccgtcct
gagtgggttcatgacaaagccgactacatgccagaaaccaggctgagaatccccgcggca
gagcccatcgaatatgctcagttccctttctacctcaacggcctgcgtgacacctcggac
ttcgttgaagccatcgaaaaagtcagaaccatctgcaataactacacgagcctggggctc
tccagctaccccaacggctaccccttcctcttctgggagcagtacattggcctccgccac
tggctcctcctgtccatcagtgtggtgctggcctgcacgttcctcgtgtgtgccgtcttc
ctcctgaacccctggacggccgggatcattgtgacagtcttggctttgatgacagttgag
ctctttggcatgatgggcctcattggaatcaagctgagtgccgtgcctgtggtcatcttg
attgcttccgtcggcattggagtggaattcactgttcatgtcgctctggcctttctaaca
gccatcggtgacaagaaccgcagggctgtgcttgccctggagcacatgtttgcgcctgtt
ctcgatggtgccgtttccactctactgggagtgctgatgcttgcaggatctgaatttgat
ttcattgtcaggtacttctttgctgtcctggcaatcctaacaatcctgggtgttctcaat
ggactagttttgctgccagtccttttgtccttcttcggaccgtatcctgaggtgtctcca
gccaatgggctgaaccggctgcccacaccttctcctgagccaccccccagcgtggtccgg
tttgctgtgcccgccggtcacacaaacaacgggtctgattcctctgactcggagtacagt
tctcagacgaccgtgtcaggcatcagcgaggagctgcgccactacgaggcccagcagggt
gctgggggccctgcccaccaagtggtcgtggaagccacagaaaaccctgtcttcgcccgc
tccactgtggtccatcctgaaccgaggcatcacccaccctcaaatcctcgacagcagtcc
cacctggactcaaggaccctgccacctggacagccaggacagcagcccagaagagaaacc
cccagagaatgcttgaggccgcctccctataaaccgcgcagagacgctttcgaaatttct
actgaagggcattctggccctagcaatagggaccgcacgggcccccggggagcccgttct
cacaaccctcggcatcacaacccagcgttcactgccatgggcagctccatgcccagctac
tgccagcccattaccaccgtgacggcctcggcgtccgtaactgttgccgtgcatcctccg
cccgcccctgggcctgggcccagtaggaacccccgaagcgggctttgcccaggctacgag
gactaccccgagactgaccacgggttgtttgaggacccccatgtgccttttaatgtccgg
tgtgagaggagggaacccaaggtggaggtcattgagctgcaggatgtggaatgtgaggag
agacgccacggcagcagctccaactga
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