Bubalus bubalis (water buffalo): 102389527
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Entry
102389527 CDS
T05912
Symbol
SMARCC2
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X4
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub03082
ATP-dependent chromatin remodeling
bbub04714
Thermogenesis
bbub05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
102389527 (SMARCC2)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
102389527 (SMARCC2)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
102389527 (SMARCC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bbub03021
]
102389527 (SMARCC2)
03036 Chromosome and associated proteins [BR:
bbub03036
]
102389527 (SMARCC2)
Transcription machinery [BR:
bbub03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
102389527 (SMARCC2)
Chromosome and associated proteins [BR:
bbub03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
102389527 (SMARCC2)
PBAF complex
102389527 (SMARCC2)
GBAF(ncBAF) complex
102389527 (SMARCC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
Motif
Other DBs
NCBI-GeneID:
102389527
NCBI-ProteinID:
XP_025139512
LinkDB
All DBs
Position
4:complement(63203747..63223740)
Genome browser
AA seq
1211 aa
AA seq
DB search
MAVRKKDGGPNVKYYEAADTVTQFDNVRLWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGKHVSNAPLTKLPIKCFLDFKAGGSLCHILAAAYKFKSDQGWRRYDFQNPSRMDRN
VEMFMTIEKSLVQNNCLSRPNIFLCPEIEPKLLGKLKDIIKRHQGTVTEDKNSASHVVYP
VPGNLEEEEWVRPVMKRDKQVLLHWGYYPDSYDTWIPASEIEASVEDAPTPEKPRKVHAK
WILDTDTFNEWMNEEDYEVNDDKNPVSRRKKISAKTLTDEVNSPDSDRRDKKGGNYKKRK
RSPSPSPTPEAKKKNAKKGPSTPYTKSKRGHREEEQEDLTKDMDEPSPVPNVEEVTLPKT
VNTKKDSESAPVKGGTMTDLDEQEDESMETTGKDEDESSTGNKGEQTKNPDLHEDNVTEQ
THHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEY
LTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTPSG
LVPLQPKTPQNSASQQMLNFPDKGKEKPTDMQNFGLRTDMYTKKNVPSKSKAAASATREW
TEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSEASLGPLAY
QPIPFSQSGNPVMSTVAFLASVVDPRVASAAAKSALEEFSKMKEEVPTALVEAHVRKVEE
AAKVTGKADPAFGLESSGIAGTTSDEPERIEESGTDEARAEGQATEDKKEPKEPREGVGT
VEEEAKEKTSEAPKKDDEKGKDGDSEKESEKSDGDPTVDPEKEKEPKEGQEEVLKEVVES
EGERKTKVERDIGEGNLSTAAAAALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEI
KLRHFEELETIMDREREALEYQRQQLLADRQAFHMEQLKYAEMRARQQHFQQMHQQQQQP
PPALPPGSQPIPPPGAAGPPTVHGLAMAPASVAPAPAGSGAPPGSLGPSEQLGQAGSTVG
PQQQPPAGAPQPGAVPPGVPPPGPHGPSPFPNQQTPPSMMPGAVPGSGHPGVAGNAPLGL
PFGMPPPPPAPSIIPFGSLADSISINLPPPPNLHGHHHHLPFAPATLPPPNLPVSMANPL
HPNLPATTTMPSSLPLGPGLGSAAAQSPAIVAAVQGNLLPSASPLPDPGTPLPPDPTAPS
PGTVTPVPPPQ
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcggaagaaggacggcggccccaacgtgaagtactacgaggccgcggacacc
gtgacccagttcgacaacgtgcggctgtggctcggcaagaactacaagaagtatatacaa
gccgaaccacccaccaacaagtccctgtctagcctggttgtacagttgctacaatttcag
gaagaagtttttggcaaacatgtcagcaatgcaccgctcactaaactgccgatcaaatgt
ttcctagatttcaaagcaggaggctccctgtgccacatacttgcagctgcctacaaattc
aagagtgaccagggatggcggcgttacgatttccagaatccatcacgcatggaccgcaat
gtggaaatgttcatgaccattgagaagtccttggtgcagaataattgcctgtctcgacct
aacatttttctgtgcccagaaattgaacccaaactgctagggaaattaaaagacattatc
aagagacatcagggaacagtcactgaggataagaacagtgcctcccacgttgtgtatccc
gttccagggaacctggaggaagaggaatgggtacggccagtcatgaagagagacaagcag
gttcttctgcactggggctactatcctgacagttatgacacgtggatcccagccagtgaa
attgaagcgtctgtggaagacgctcctactcctgagaaacctaggaaggttcatgcaaaa
tggatcctggacacagacaccttcaatgaatggatgaatgaggaagactacgaagtaaat
gatgacaaaaaccctgtctcccgccgaaagaagatttcagccaagacgctgacagatgag
gtgaacagcccagattcagaccgacgggacaagaagggggggaactataagaagaggaag
cgctccccctcaccttcaccgaccccagaagccaagaagaagaatgctaagaaaggtcct
tcaacaccttacaccaagtcaaagcgaggccacagagaggaggagcaagaagacctgaca
aaggacatggatgagccctcaccggtccccaatgtggaagaggtgacattgcctaagaca
gtcaacactaagaaggactcggagtccgccccagtcaaaggaggcaccatgactgacctg
gatgaacaagaggatgaaagcatggagaccacaggcaaggatgaggacgagagcagcacg
ggcaacaagggggagcagaccaagaacccagacctgcatgaggacaacgtgactgagcag
acccaccacatcatcatcccgagctatgctgcctggtttgactacaacagtgttcacgcc
atcgaacggagggctctccctgagttcttcaatggcaagaacaagtccaagactccagaa
atctacctggcctatcggaacttcatgattgatacttaccggctaaacccccaggagtat
ctcacgtctactgcctgtcgcaggaacctggcgggtgatgtctgtgccatcatgagggtc
catgccttcctagaacagtggggtctcattaactaccaggtggatgccgagagtcgacca
actcccatggggcctccgcccacctctcacttccacgtcttggcagacacaccatccggg
ctggtgccgctgcagcccaagaccccgcagaactctgcttcccagcaaatgctcaacttc
cctgacaaaggcaaggagaaaccgacagacatgcagaacttcgggctgcgcacagacatg
tacacgaagaagaacgtcccctccaagagcaaagccgcagccagtgccactcgagagtgg
acagaacaggagaccctgctgctcctggaggcactggaaatgtacaaagatgactggaac
aaagtgtcagagcacgtgggaagccgcacacaggatgaatgcatcttgcattttctccgg
cttcccatcgaagacccgtacctggaggactcagaggcctccctgggccccctggcctac
cagcctatccccttcagccagtcaggcaaccctgtgatgagcaccgttgccttcctggcc
tctgtcgtcgaccctcgagtggcctcagctgctgcgaagtcagccctagaagagttctcc
aaaatgaaggaagaggtacccacagctttggtggaggcccacgttaggaaagtggaagaa
gccgccaaagtgacaggcaaggcagacccagcctttggcctggaaagcagtggcatcgca
gggaccacctctgatgagccggagaggatcgaggagagcgggactgacgaggcgcgggca
gagggccaggccacagaggataagaaggaacccaaggaacctcgagaaggagttgggact
gtggaggaagaagcaaaggagaagaccagtgaggcacccaagaaggacgatgagaaaggg
aaggatggcgacagcgagaaggagtcagaaaagagtgatggagacccgacagtggatcct
gagaaggagaaggagcccaaggaagggcaggaggaggtgctgaaagaagtggtggagtcg
gagggggaaaggaagacaaaggtggagcgtgacattggcgagggcaacctctccaccgcc
gccgccgccgccctggctgctgccgctgtgaaggccaagcacttggctgctgttgaggag
aggaagatcaaatcgctggtggccctgctggtggagacccagatgaaaaagttggaaatc
aaactccggcactttgaggagctagagacgatcatggaccgggagcgagaagcactggag
taccagaggcagcagctcttggccgacagacaagccttccacatggagcagctgaagtac
gcagagatgcgggcccggcagcagcacttccagcagatgcaccaacagcagcagcagcca
ccaccagccctgcccccgggctcccagcctatcccaccaccaggcgctgctgggccaccc
actgtccacggcttggccatggctccagcctctgtggccccggctcctgcgggcagtggg
gcccctcctggaagcttggggccctccgaacagcttgggcaggcagggtcaactgtgggg
ccacagcagcagccaccagctggagccccccagcctggggccgtcccaccaggggtaccc
ccccctggaccccatggcccctcaccgttccccaaccaacaaactcctccctcaatgatg
ccaggggcagtgccaggcagcgggcacccaggcgtggcgggtaatgctcctttgggtttg
ccttttggcatgccgcctccccctcctgctccatccatcatcccatttggtagcctagcc
gactccatcagtattaacctcccccctcctcctaacctgcatgggcatcaccaccatctc
ccgttcgccccggccactctccccccacctaacctgcctgtgtccatggcgaaccctcta
catcctaacctgccggcgaccaccaccatgccatcttctttgcctcttgggccggggctc
ggatccgccgcagcccagagccctgccattgtggcagctgttcagggcaacctcctgccc
agtgccagcccactgccagacccaggcacccccctgcctccagaccccacggccccgagc
ccaggcacagtcacccccgtgccacccccacagtga
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integrated database retrieval system
