Bubalus bubalis (water buffalo): 102389816
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Entry
102389816 CDS
T05912
Symbol
COL6A1
Name
(RefSeq) collagen alpha-1(VI) chain precursor
KO
K06238
collagen type VI alpha
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub04151
PI3K-Akt signaling pathway
bbub04510
Focal adhesion
bbub04512
ECM-receptor interaction
bbub04820
Cytoskeleton in muscle cells
bbub04974
Protein digestion and absorption
bbub05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
102389816 (COL6A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102389816 (COL6A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102389816 (COL6A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
102389816 (COL6A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
102389816 (COL6A1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
102389816 (COL6A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
bbub04147
]
102389816 (COL6A1)
00536 Glycosaminoglycan binding proteins [BR:
bbub00536
]
102389816 (COL6A1)
Exosome [BR:
bbub04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
102389816 (COL6A1)
Glycosaminoglycan binding proteins [BR:
bbub00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102389816 (COL6A1)
Hyaluronan
Extracellular matrix or blood plasma proteins
102389816 (COL6A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
VWA_CoxE
Motif
Other DBs
NCBI-GeneID:
102389816
NCBI-ProteinID:
NP_001277797
UniProt:
E3VLN2
LinkDB
All DBs
Position
1:190517308..190538232
Genome browser
AA seq
1027 aa
AA seq
DB search
MRLPRALLPLLLQACWASAQDDTVASRAIAFQDCPVDLFFVLDTSESVALRLKPYGALVD
KVKSFTKRFIDNLKDRYYRCDRNLVWNAGALHYSDEVEIIRGLTRMPSGRDELKSSVDAV
KYFGKGTYTDCAIKKGLEELLVGGSHLKENKYLVVVTDGHPLEGYKEPCGGLEDAVNEAK
HLGIKVFSVAITPDHLEPRLSIIATDHTYRRNFTAADWGQSRDAEEVISQTIETITDMIK
NNVEQVCCSFECQPARGPPGPRGDPGYEGERGKPGLPGEKGEAGDPGRPGDLGPVGYQGM
KGEKGSRGEKGSRGPKGYKGEKGKRGMDGVDGMKGETGYPGLPGCKGSPGFDGIQGPPGP
KGDAGAFGLKGQKGEPGADGEPGRPGNTGPPGDEGEPGEPGPPGEKGEAGDEGNAGPDGA
PGERGGPGERGPRGTPGARGPRGDPGEAGPQGDQGREGPVGVPGDPGEAGPIGPKGYRGD
EGPPGTEGPKGAPGPAGPPGDPGLMGERGEDGPPGNGTEGFPGFPGYPGSRGPPGINGTK
GYPGLKGDEGEAGDPGEDNNDIAPRGAKGAKGYRGPEGPQGPPGHVGPPGPDECEILDII
MKMCSCCECKCGPIDILFVLDSSESIGLQNFEIAKDFIVKVIDRLSKDELVKFEPGQSHA
GVVQYSHNQMQEHVDLRDPNIRSAQDLKEAIKKLQWMGGGTFTGEALQYTRSRLLPPTPN
NRIALVITDGRSDTQRDTTPLSVLCGPDIQVVSVGIKDVFGLAAGSDQLNVISCQGLAPQ
GRPGISLVKENYAELLDDGFLKNITAQICIDKKCPDYTCPIIFSSPADITILLDGSASVG
SHNFDITKRFAKRLAERFLTASRTDPGQDVRVAVVQYSGTGQQRPERAALQFLQNYTVLA
NTVDSMDFFNDATDVIDALGYVTRFYREASSTAAKKRLLLFSDGNSQGATPATIEKAVQE
AQRAGLEIFAVVVGRQVNEPHVRVLVTGKAAEYDVVFGERHLFRVPSYQALLRGVFYQTV
SRKVALD
NT seq
3084 nt
NT seq
+upstream
nt +downstream
nt
atgaggctgccccgcgctctgctccccctgctgctgcaggcctgctgggcctccgcgcag
gacgacaccgtggcctcaagggccatcgccttccaagactgccctgtggacctgttcttt
gtgctggacacctccgagagtgtggccttgaggctgaagccctatggggccctggtggac
aaggtcaagtccttcaccaagcgcttcattgacaacctgaaggacaggtactaccgctgt
gaccgcaacctggtgtggaatgcgggagcgctgcactatagcgacgaggtggagatcatc
cgtgggctcacgcgcatgcccagcggccgcgacgagcttaagagcagcgtggacgctgtc
aagtacttcggaaagggcacctataccgactgcgccatcaagaagggtctggaggagctg
ctcgtggggggctcccacctgaaggagaacaagtacctggtcgtggtgactgacgggcac
cccctggagggctacaaggagccctgcgggggcctggaggatgctgtgaacgaggccaag
catctgggcatcaaagtcttctccgtggccatcacgcccgaccacctggagccacgtctg
agcatcatcgccacggaccacacgtaccggcgcaacttcacggcggccgactgggggcag
agccgcgacgccgaggaagtcatcagccagaccattgaaaccatcacggacatgatcaaa
aataatgtggagcaagtgtgctgctccttcgagtgccagcccgccagaggaccccccggg
cctcgaggcgaccctgggtacgagggagaaagagggaagccggggctcccaggagagaaa
ggagaagctggagagcctggaagacctggggaccttggacccgttggctaccagggcatg
aagggagaaaaagggagccgaggggagaagggctccaggggacccaaaggctacaagggc
gagaagggaaagcgtggcatggacggcgtggatggcatgaagggggagacagggtaccct
ggcctgccaggctgcaagggctcacccggattcgatggtatccaaggaccccccgggccc
aagggtgatgcaggtgccttcggactgaaaggacagaagggtgagcccggagcagacggg
gagcctgggaggccagggaacacggggccccccggagatgagggtgagcctggagagccc
ggtcccccgggagagaagggagaagccggcgatgagggaaatgcaggaccagacggagcc
cccggagagaggggcggccctggggaaagaggacctcgagggaccccaggtgcacggggc
ccaagaggagacccgggtgaagctggaccccaaggtgaccagggacgagaaggccccgtc
ggtgtccccggtgacccgggcgaggctggccccattgggccaaaaggataccgaggcgat
gagggaccccctgggaccgagggccctaaaggagctccggggcctgcaggcccccctgga
gaccccgggctgatgggtgagaggggtgaagacggcccccccgggaatggcaccgaaggc
ttccccggctttcccggctatccaggcagcagaggtcctcctgggataaacggcaccaaa
ggctaccctggcctcaagggggacgagggagaagccggggaccccggagaggacaataat
gacattgctccacgaggcgccaaaggagcaaagggctaccgaggtcctgaaggcccccag
ggacccccaggacacgtgggaccaccagggccagacgaatgcgagattttggacatcatc
atgaaaatgtgctcttgctgtgagtgcaagtgcgggcccatcgacatcctcttcgtgctg
gacagctccgagagcatcggcctacagaacttcgagatcgccaaggacttcattgtcaag
gtcattgaccggctgagcaaggacgagctggtcaagtttgagcctgggcagtcgcatgcg
ggcgtggtgcagtacagccacaaccagatgcaggagcacgtggacctgagggaccccaac
atcaggagtgcccaggacctcaaggaggccatcaagaagctgcagtggatgggcggcggc
accttcacgggcgaggccctgcagtacacccggagccggctgctgccacccaccccgaac
aaccgcattgccctggtcatcactgacggccgctcggacacccagagggacaccacccca
ctcagcgtgctctgcggccctgacatccaggtggtctccgtgggcatcaaggatgtcttt
ggcttggccgcgggctccgaccagctcaacgtcatctcctgccaaggcctggcaccccag
ggacggccgggcatctcactggtcaaggaaaactatgccgagcttctggacgatggcttc
ctgaagaatatcaccgcccagatctgcatagacaagaaatgtccagattacacctgccca
atcatcttctcctccccggccgacatcaccatcctcctggacggctccgccagcgtgggc
agccacaactttgacatcaccaaacgctttgccaagcggctggcagagcgcttcctgaca
gcgagccggacagacccgggccaggacgtgcgcgtggcggtggtgcagtacagtggcacg
gggcagcagcggccggagcgcgcggccctgcagttcctgcagaactacacggtgctggcc
aacaccgtggactccatggacttcttcaatgatgccaccgacgtcatagacgccctgggc
tacgtgacccgcttctaccgcgaggcctcatccaccgccgccaagaagaggctgctgctc
ttctcggatggcaactcgcagggtgccacgccagccaccattgagaaggcggtgcaggag
gcccagcgggcgggcctggagatcttcgcggtggtggtgggccgccaggtgaacgagccc
cacgtgcgtgtcctggtcaccggcaaggcggctgagtatgacgtggtcttcggcgagcgc
cacctgttccgcgtgcccagctaccaggcgctgctgcggggtgtcttctaccagacggta
tccaggaaggtggcgctggactag
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