Bubalus bubalis (water buffalo): 102389894
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Entry
102389894 CDS
T05912
Symbol
DDX55
Name
(RefSeq) ATP-dependent RNA helicase DDX55
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
bbub
Bubalus bubalis (water buffalo)
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
bbub03009
]
102389894 (DDX55)
Enzymes [BR:
bbub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102389894 (DDX55)
Ribosome biogenesis [BR:
bbub03009
]
Eukaryotic type
Pre-60S particles
Helicases
102389894 (DDX55)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
CTT_SPB4
Helicase_C_2
Cas3-like_C_2
SBF_like
AAA_22
YbjM
Motif
Other DBs
NCBI-GeneID:
102389894
NCBI-ProteinID:
XP_006041464
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Position
17:20598856..20616951
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AA seq
601 aa
AA seq
DB search
MEHVTEGSWESLPVPLHPQVLSVLRELGFPYMTPVQSATIPLFMKNKDVAAEAVTGSGKT
LAFVIPIVEILLRREEKLKKSQVGAIIITPTRELAVQIEEVLSHFTKPFPQFSQILWIGG
RNPGEDVARFKELGGNIIVATPGRLEDMFRRKAEGLDLASCVRSLEVLVLDEADRLLDMG
FETSINTILEFLPKQRRTGLFSATQTQEVENLVRAGLRNPVRISVKEKGVAASSTQKTPS
RLENHYMVCKADEKFNQLVHFLRNHKQEKHLVFFSTCACVEYYGKALEALVKGVKIMCIH
GKMKYKRNKIFMEFRKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTA
RIGRGGSALVFLLPMEESYINFLAINQKCPLQEMKPQKNTADLLPKLKAMALGDRAVFEK
GMKAFVSYVQAYAKHECNLIFRLKDLDFASLARGFALLRMPKMPELRGKQFPDFVPVDVN
TDTIPFKDKIREKQRQKQLLEQQRKEKTENDGRRKFIKNKAWSKQKAKKEKKKKLTEKRK
REEGSDMEDEDMEELLNDTRLLKKFKKGKITEEEFEKGLLTSGKRSMNKADLEISDLEDD
C
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atggagcacgtgacggagggttcctgggagtcgctaccggtgccgctgcatccgcaagtg
ctgagtgtcttgagggagctcggttttccgtacatgacaccggtgcagtccgcaactatc
cctctgttcatgaaaaacaaagacgttgctgcagaagcggtcacaggtagtggcaaaacc
ctcgctttcgtcatccccatcgtggaaattctcctgaggagggaagagaagttaaagaag
agtcaggtgggcgccataatcatcacacccacacgagagctggctgttcagatagaggag
gtcctgtctcatttcacgaagcccttcccacagtttagccagattctctggattggaggc
aggaatcctggagaagatgtcgccagatttaaggagcttggtgggaacatcatcgtggca
accccaggccgtctggaggacatgttccgaaggaaggctgagggcctcgatctggccagc
tgcgtgaggtccctggaggtcctggtattggatgaagcagacaggcttctggacatgggt
ttcgagacaagcataaacaccatcctggagttcttgccgaagcagaggagaacgggcctt
ttctcggccactcagacccaggaggtggagaacctggtgagagctggcctgcggaacccc
gtgcgcatctcggtgaaggagaagggcgtggcggccagcagcacccagaagaccccttcc
cgcctggagaaccactacatggtctgtaaggcagatgagaaatttaatcagctggtacat
tttcttcgaaatcataagcaggagaaacatctggtcttcttcagcacctgcgcctgtgtg
gaatactacggaaaggctctagaggccctggtgaagggtgtgaagataatgtgcattcac
ggaaagatgaaatacaagcgcaataagatcttcatggagttccgcaaattgcagagtggg
attttggtgtgcactgacgtgatggcccgaggaatagatattcctgaagtaaactgggtt
ttgcagtatgatcctcccagtaatgccagtgccttcgtgcatcgctgtggccgcacagcc
cgcatcggccgcggcggcagtgcgctcgtcttcctccttcccatggaagagtcgtacatc
aacttccttgcaattaaccaaaaatgccccctgcaggagatgaaaccccagaagaacaca
gccgacctccttccaaagctcaaggccatggccctgggtgacagagccgtgtttgagaag
ggcatgaaagcttttgtgtcatacgtccaggcttatgccaagcacgagtgcaacctcatc
ttcagattaaaggaccttgattttgctagtcttgctcgaggttttgccctgctgaggatg
cccaagatgccagagctgagaggaaagcagtttccagatttcgtgcctgtggatgtcaac
acagacaccattccatttaaagacaaaatcagagaaaagcagaggcagaagcaattattg
gagcagcaaagaaaagagaaaacagaaaatgacgggagaagaaaattcataaaaaataaa
gcttggtcaaagcagaaggccaaaaaggaaaagaagaaaaaactgactgaaaaaaggaaa
agggaagagggttctgatatggaagatgaagacatggaggaacttctgaatgacacaagg
ctcttgaaaaagtttaaaaaaggcaaaattactgaagaagaatttgagaaggggctgttg
acaagtggcaaaagatcaatgaataaagctgatttggagatctcagatttggaagatgac
tgctga
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